BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0011.p (577 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 1001 0.0 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 130 3e-31 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 90 4e-19 gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite s... 72 1e-13 gi|300312076|ref|YP_003776168.1| signal transduction histidine k... 69 1e-12 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/576 (90%), Positives = 553/576 (96%) Query: 1 VRKLAVGLAVLLLVLGVASLVQGVMYTLGWLPLDGAHPISPLAVPPLMSVGFVLMALALL 60 +R++A GL+ +LL LG+ +L G+MY LGWLP+D HP+SPL +PPL+S+GFV+MA LL Sbjct: 101 LRRVAAGLSWMLLALGLGTLAHGLMYALGWLPIDQNHPLSPLVIPPLLSLGFVVMAAVLL 160 Query: 61 LHDWRLLGGYYPAEYLAFTLMGLSAIPLVGYLYDVSQFIYLDFPLPISLLSSLVFALLGA 120 L DWR+LGGYYPAEYL+F L+GL+AIPLVGYLY VSQF+YLDFPLP+SLLS+LV ALL Sbjct: 161 LQDWRMLGGYYPAEYLSFALIGLAAIPLVGYLYGVSQFVYLDFPLPVSLLSALVMALLAT 220 Query: 121 ALLMARPSHPLMAVILRMAPGGQMLRHLLPQTLFLLLAFSLLLNWGMTHGWILPELVLPT 180 ALLMARP+HPLMA+I R+APGGQMLRHLLPQT+FLLLAFSLLLNWGMTHGWILPEL+LPT Sbjct: 221 ALLMARPAHPLMAIITRIAPGGQMLRHLLPQTVFLLLAFSLLLNWGMTHGWILPELLLPT 280 Query: 181 LTLINGVIVLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGL 240 LTLINGVIVLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGL Sbjct: 281 LTLINGVIVLFIFWGSASRLDSEYGERTRNAQKLAETSALLNAVSESTSDPIFVKNRQGL 340 Query: 241 MIFANPATLHKLGKTWEETMYRSSRELFLVEEEADTVDRDDRRVMASGKPEKLEQTLHLP 300 MIFANPATLHKLGKTWEETMYRSSRELFLV EEADT+DRDDRRVMASGKPEKLEQTLHLP Sbjct: 341 MIFANPATLHKLGKTWEETMYRSSRELFLVPEEADTIDRDDRRVMASGKPEKLEQTLHLP 400 Query: 301 EGVVTFQTAKVPWFGKDGSVQGVIGISTDITERKQAEDELRERESRLEKTVIERTALLRE 360 EGVVTFQTAKVPWFGKDGSVQGVIGISTDITERKQAEDELR+RES+LEKTVI+RTALLRE Sbjct: 401 EGVVTFQTAKVPWFGKDGSVQGVIGISTDITERKQAEDELRQRESQLEKTVIQRTALLRE 460 Query: 361 LTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKTRMQGLMK 420 LTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRK RMQGLMK Sbjct: 461 LTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADRKVRMQGLMK 520 Query: 421 SLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVDVGHEMEIA 480 SLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDV+VGHEMEIA Sbjct: 521 SLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIA 580 Query: 481 IYRMLQEMLNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLR 540 IYRMLQEMLNNVTKHAKASKVDVILD+DEDHVALTVRDDGVGIPEERRDNHKTYGLRGLR Sbjct: 581 IYRMLQEMLNNVTKHAKASKVDVILDIDEDHVALTVRDDGVGIPEERRDNHKTYGLRGLR 640 Query: 541 ERATFFGGEVDIRSTPGKGALISISLPIRPELAASE 576 ERATFFGGEVDIRSTPGKGALI+ISLPIRPEL SE Sbjct: 641 ERATFFGGEVDIRSTPGKGALITISLPIRPELVPSE 676 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 110/376 (29%), Positives = 182/376 (48%), Gaps = 41/376 (10%) Query: 210 NAQKLAETSALLNAVSESTSDPIFVKNRQGLMIFANPATLHKLGKTWEETMYRSSRELFL 269 +AQ L E A NA + P ++K+ Q + NPA G T + + EL + Sbjct: 121 SAQALREMQARFNAFMNAAPMPTWIKDAQLRYSYVNPAQSAFYGMTPGDMDGLTDLEL-M 179 Query: 270 VEEEADTVDRDDRRVMASGKPEKLEQTLHLPEGVVT-------FQTAKVPWFGKDGSVQG 322 A +DR+V+ +K E LH E V + P G +G Sbjct: 180 SSGAAAASQENDRKVL----EQKCE--LHTQETVFDHNHNARILDVVRFPISG-EGKGDM 232 Query: 323 VIGISTDITERKQAEDELRERESRLEKTVIERTALLRELTNHLETVREEEKRAIARELHD 382 V G++ D+TER+Q+ +L + I+R LL ++ + V+E E++ +AR LHD Sbjct: 233 VAGLAIDVTEREQSRRDL--------ELAIQRQQLL---SSRVIEVQERERQHLARGLHD 281 Query: 383 NMGASLTALSMHLEGVYQIL----PPDEKWADRKTRMQGLMKSLVATTRRIQTELRPNTL 438 ++G SLTAL ++LE + ++ P + D ++ +++A R + +LRP L Sbjct: 282 DVGQSLTALKINLETIKKMGSLEGPSLQNGID-------IVTAVLAQVRSLSLDLRPPQL 334 Query: 439 DLFGLKAAISEQLDELHERTGIACHASLPDEDVDVGHEMEIAIYRMLQEMLNNVTKHAKA 498 D GL AA+ +++ + + D + H++E +R++QE + N+ +HA+ Sbjct: 335 DNLGLIAALRSYVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARC 394 Query: 499 SKVDVILDVDEDHVALTVRDDGVGIPEER-RDNH---KTYGLRGLRERATFFGGEVDIRS 554 + V +D D V L++RDDG G ER R N ++GL + ERA GG ++I S Sbjct: 395 QNIWVKIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITS 454 Query: 555 TPGKGALISISLPIRP 570 PG G I + LP+ P Sbjct: 455 APGAGTEIVMHLPVAP 470 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 19/229 (8%) Query: 356 ALLRELTNHLETVREEEKRAIARELHDNMGASLTALSMHLEGVYQIL--PPDEKWADR-- 411 A LR+L + +EEE+ ++R+LHD + L ++ + +E L P++ R Sbjct: 233 AKLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAG 292 Query: 412 --KTRMQGLMKSLVATTRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIAC-----HA 464 KT Q + ++A RRI +LRP LD GL AA+ E + G + Sbjct: 293 FEKTATQ--INGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQ 350 Query: 465 SLPDEDVDVGHEMEIAIYRMLQEMLNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGIP 524 + D+ + + ++R+ QE L N+ +HA AS++ V L + + L V+D+G G Sbjct: 351 AQADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFD 410 Query: 525 EERRDNHKTY--GLRGLRERATFFGGEVDIRSTPGKGALISI----SLP 567 + D+H + GLR +RER GGE+ I S+P ++ ++ SLP Sbjct: 411 LGQVDDHSRHGIGLRNMRERIEAVGGELGIDSSPAGTSISAVIARASLP 459 >gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 372 EKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWADR------KTRMQGLMKSLVAT 425 E+ +A+ LHD++ L L++ ++ + L D R +T +Q + + Sbjct: 446 ERNLLAQGLHDSIAQGLNFLNLQVQMLEDSLARDRLDEIRDIAPLLRTGVQENYEDVREL 505 Query: 426 TRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVDVGHEMEIAIYRML 485 +T L+ + LD + + + LD+L ++G+ +L + + E ++ + +L Sbjct: 506 LLNFRTRLQDSNLD-----SEMRKALDKLQRQSGLQGQITLTGDGPPLAPEQQLQVLFIL 560 Query: 486 QEMLNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGIPEE--RRDNHKTYGLRGLRERA 543 QE L+N+ KHA+A +V + +D +D +TV DDG G E R + GLR ++ERA Sbjct: 561 QEALSNIRKHARAQQVQISVDNRQD-FRMTVSDDGHGFTLESARAKGLEHVGLRIMQERA 619 Query: 544 TFFGGEVDIRSTPGKGALISISLPIRPELAA 574 G ++I S PG G I+++L + L A Sbjct: 620 ERLGANLEIDSQPGHGTRIALTLLRQERLVA 650 >gi|300312076|ref|YP_003776168.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 356 Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 368 VREEEKRAIARELHDNMGASLTALSMHLEGVYQILPPDEKWAD--RKTRMQGLMKSLVAT 425 +RE+E+ IAR+LHD++G L + M L + + L A + L++ +A+ Sbjct: 150 IREQERERIARDLHDDLGGVLAGVGMALGRLQEQLAAQGLAAPLAEADEARQLLQQAMAS 209 Query: 426 TRRIQTELRPNTLDLFGLKAAISEQLDELHERTGIACHASLPDEDVDVGHEMEIAIYRML 485 I EL P ++ FGL A+ Q ++ + C P + + + R+L Sbjct: 210 MHSIIDELHPPIVE-FGLVDALQWQCRQIQREYRLHCQLDCPPTLEQEDRFLILGLLRIL 268 Query: 486 QEMLNNVTKHAKASKVDVILDVDEDHVALTVRDDGVGI----PEERRDNHKTYGLRGLRE 541 +E +N +H +AS + V L + + + + + DDG GI +E H +GLR +RE Sbjct: 269 REAASNAARHGRASALRVDLRMRQARLEMQIADDGCGIAPLHAKEVAPRH-GHGLRNMRE 327 Query: 542 RATFFGGEVDIRSTPGKGALISISLPI 568 RA GGE+ I + G +I +P+ Sbjct: 328 RAQALGGELFIEAGQDGGVVIRTLIPV 354 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,577,430 Number of extensions: 60569 Number of successful extensions: 283 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 6 Length of query: 577 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 487 Effective length of database: 1,193,720 Effective search space: 581341640 Effective search space used: 581341640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)