BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0058.p (618 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 1220 0.0 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 267 2e-72 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 237 2e-63 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 233 5e-62 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 227 2e-60 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/618 (95%), Positives = 608/618 (98%) Query: 1 MFSWFEKLVHPYPESQPVPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 MFSWFEKLV PYPE P+PPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL Sbjct: 1 MFSWFEKLVQPYPEHHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 Query: 61 GRIVDWLSKIEPAQLWAQEGHTLVWLVVILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 GRIVDWL+KI P+QLW+QEGHTL WLV+ILAASPLLIALQTMYKHQTLAGNFPMLLRWNF Sbjct: 61 GRIVDWLAKIAPSQLWSQEGHTLTWLVLILAASPLLIALQTMYKHQTLAGNFPMLLRWNF 120 Query: 121 HRLMLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFIAIYFATLIGVVGSFD 180 HRLMLSQSMSFYQNEFAGRVATKVMQ+ALAVRDFCMIVGDILVFI IYFATLIGVVGSFD Sbjct: 121 HRLMLSQSMSFYQNEFAGRVATKVMQTALAVRDFCMIVGDILVFITIYFATLIGVVGSFD 180 Query: 181 MWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 +WMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG Sbjct: 181 IWMLAPFFIWLAAFAVALRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHAG 240 Query: 241 READYARSAMREFLTTVNRQMRLVSGFEVVNHILNMVLIIGATGVSLYLWTQGKVGIGAV 300 READYARSAMREFL TVN+QMRLVSGFEVVNH+LNMVLIIGATGVSLYLWTQGKVG+GAV Sbjct: 241 READYARSAMREFLVTVNQQMRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAV 300 Query: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHEVKDAADAKPIKVSQGEL 360 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAH+VKDA DA+P+KVSQGEL Sbjct: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQPLKVSQGEL 360 Query: 361 RFEGVSFSYGGSAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 RFEGVSFSYGG+APRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT Sbjct: 361 RFEGVSFSYGGAAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 Query: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMIHAAERAEAHDF 480 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEM HAAERAEAHDF Sbjct: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHAAERAEAHDF 480 Query: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA Sbjct: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 Query: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELLAAGGLYARLWS 600 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQG+HAELLAA GLYARLWS Sbjct: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLAANGLYARLWS 600 Query: 601 HQSGGFLGEEEEDAAVMA 618 HQSGGFLGEEEEDAAVMA Sbjct: 601 HQSGGFLGEEEEDAAVMA 618 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 267 bits (682), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 163/402 (40%), Positives = 231/402 (57%), Gaps = 23/402 (5%) Query: 211 NQADARSLMTGRITDAYTNIATVKLFSHAGREAD-YARSAMREFLTTVNRQMRLVSGFEV 269 N+ D+ + R D+ N TVK F + EA Y R V Q S + Sbjct: 215 NELDSHA--NTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSL 268 Query: 270 VNHILNMVLIIGATGVSLYLW------TQGKVGIGAVAASTAMALRLNGIAHWVMWEMSS 323 +N + ++ I V+L LW G + +G + A ++L +++ Sbjct: 269 LNTGQSAIIAIA---VTLILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYRE 325 Query: 324 LFEHVGTVQDGINTLARAHEVKDAADAKPIKVSQGELRFEGVSFSYGGSAPRPVVDKLDL 383 + + + ++ + L EV D+ADAKP+K L F+ V FSY + R ++ +D Sbjct: 326 IKQSLADMERLFSLLEEHREVADSADAKPLKTQGANLHFDHVDFSYERN--RQILFDVDF 383 Query: 384 VIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQ 443 ++ G +VG SG+GKST+ LL RFYD++ G I IDGQD+ VTQ SLR IG+V Q Sbjct: 384 TVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQ 443 Query: 444 DTSLLHRSVRENITYGRPDASDAEMIHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVK 503 DT L + ++ NI YG+P A+ +++ AA+ A HDFI +L D GY + VGERG+K Sbjct: 444 DTVLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPD-----GYASMVGERGLK 498 Query: 504 LSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLS 563 LSGG++QR+AIAR +LKD IL+ DEATSALDS E AIQ L ++ +T + IAHRLS Sbjct: 499 LSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLS 558 Query: 564 TIAAMDRLIVLDQGRIVEQGTHAELLAAGGLYARLWSHQSGG 605 TI +++VLD GRIVE+GTHA LL AGGLYA++W Q G Sbjct: 559 TIVNAQQILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAG 600 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 189/518 (36%), Positives = 279/518 (53%), Gaps = 64/518 (12%) Query: 116 LRWNFHRLMLSQSMSFYQNEFAGRVATKVMQS------------ALAVRDFCMIVG--DI 161 LR + +++QS F++ G V +++ ++A+R+ + +G + Sbjct: 126 LRSAVYAHVVTQSPEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSM 185 Query: 162 LVFIAIYFATLIGVVGSFDMWMLAPFFIWLAAFAVALRYF---VPRLSAVARNQADARSL 218 L F + ++I + LAA + + ++ V +LS ++++ S Sbjct: 186 LFFTSARLTSII--------------IVMLAAVVLPIVFYGRRVRKLSRASQDRVADASA 231 Query: 219 MTGRITDAYTNIATVKLFSHAGREAD-YARSAMREFLTTVNRQMRLVSGFEVVNHILNMV 277 M G I +A + TV+ F+H EA +A+S R F T + R +R S VV ++ Sbjct: 232 MAGEILNA---MPTVQAFTHEEIEARRFAQSVERAFGTAMER-VRARSLLTVVA----IL 283 Query: 278 LIIGATGVSLYLWTQGKVGIGAVAASTAMALRLNGI---AHWVMWEMSSLFEHVGTVQDG 334 L+ GA + LW +G AV + L A V + +L E +G Q Sbjct: 284 LVFGA--IVFVLW----LGAHAVMEGSMSGGELGQFILYASLVAGSLGALSEVMGDTQRA 337 Query: 335 INTLAR------AHEVKDAA---DAKPIKVSQGE-LRFEGVSFSYGGSAPRPVVDKLDLV 384 R AH + + P + + G L +GV F Y P + +L L Sbjct: 338 AGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAALTVQGVDFHYPSRPGHPSLTQLSLT 397 Query: 385 IRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQD 444 ++PGE + +VG SGAGK+T+ LLLRFYD + G+I +DG DI ++ +LR IG+V QD Sbjct: 398 VQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQILLDGVDIRYLDLQALRGAIGIVPQD 457 Query: 445 TSLLHRSVRENITYGRPDASDAEMIHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKL 504 T + + ENI +GRP+ASDAE+I AA+ A AH+FI L + Y +GERGV+L Sbjct: 458 TVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHEFIERLPGS-----YACFLGERGVRL 512 Query: 505 SGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLST 564 SGGQRQRIAIAR +LK+ P+LLLDEATSALD+E E +Q +L M G+T + IAHRL+T Sbjct: 513 SGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLAT 572 Query: 565 IAAMDRLIVLDQGRIVEQGTHAELLAAGGLYARLWSHQ 602 + DR+IVL+ GRIVE GTHAEL+A GLYA L + Q Sbjct: 573 VQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQ 610 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 233 bits (593), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/249 (50%), Positives = 165/249 (66%), Gaps = 7/249 (2%) Query: 357 QGELRFEGVSFSYGGSAPRPVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEG 416 G + F+ VSF Y P V+ L L IRPGE IG+VGRSG+GKST+ L+ R Y E Sbjct: 474 NGAISFDLVSFRYRPETPE-VIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICET 532 Query: 417 GRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMIHAAERAE 476 GRI++DGQDIA + SLR QIG+V Q+ +L RS+R+NI P ++I AA+ A Sbjct: 533 GRISVDGQDIAIIDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAG 592 Query: 477 AHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDS 536 AHDFI L + GYD VGE+G LSGGQRQRIAIAR ++ + IL+ DEATSALD Sbjct: 593 AHDFICELPE-----GYDTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDY 647 Query: 537 EVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELL-AAGGLY 595 E E IQ ++ ++ G+TV+ IAHRLS + DR+IV+++GR+ E G+H EL+ GG+Y Sbjct: 648 ESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELIDLPGGIY 707 Query: 596 ARLWSHQSG 604 A L Q+G Sbjct: 708 AHLHRLQAG 716 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/394 (38%), Positives = 213/394 (54%), Gaps = 22/394 (5%) Query: 217 SLMTGRITDAYTNIATVKLFSHAGREADYARSAMREFLTTVNRQMRLVSGFEVVNHILNM 276 S +T + D I VK F+ RE R A R L +R ++ S F L Sbjct: 362 SEVTNVLADTIPGIRVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTE 421 Query: 277 VLIIGATGVSLYLWTQGKVGIGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGIN 336 V ++ ++ + ++ +G + A A R + S+ V Q Sbjct: 422 VGLLVVWVFGIWQVSSNQITVGVLTAFLAYISRFYT-------RLDSMSRIVSVTQKAAA 474 Query: 337 TLARAHEVKDAADAKP-------IKVSQGELRFEGVSFSYGGSAPRPVVDKLDLVIRPGE 389 R ++ D + P ++ QG + + F YG R V+ + L I PGE Sbjct: 475 GAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGN---RAVIRNMSLSIAPGE 531 Query: 390 KIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLH 449 IGLVG SG+GKST+VNL+ RFYD+ G I IDG DI + R IG+V Q+ L Sbjct: 532 MIGLVGHSGSGKSTMVNLICRFYDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFF 591 Query: 450 RSVRENITYGRPDASDAEMIHAAERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQR 509 ++ ENI YG+P+A+ E+I AA A AH+FI L GYD+ VGERG LSGG+R Sbjct: 592 GTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQ-----GYDSLVGERGQALSGGER 646 Query: 510 QRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMD 569 QRI+IAR +L D IL+LDEATS++D+ E IQ +L L++G+T +AIAHRLST+ D Sbjct: 647 QRISIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKAD 706 Query: 570 RLIVLDQGRIVEQGTHAELLAAGGLYARLWSHQS 603 RL+VLD+G++VE G H EL+A G Y +L+ Q+ Sbjct: 707 RLVVLDRGQVVEVGNHEELMAREGHYYKLYQAQA 740 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,965,593 Number of extensions: 84510 Number of successful extensions: 765 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 616 Number of HSP's successfully gapped: 136 Length of query: 618 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 527 Effective length of database: 1,188,985 Effective search space: 626595095 Effective search space used: 626595095 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)