BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0055.p (568 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 824 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 360 e-100 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 355 7e-99 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 352 6e-98 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 335 5e-93 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/568 (78%), Positives = 490/568 (86%), Gaps = 14/568 (2%) Query: 1 MQTLPPKRRSLSVAAQLALSFALVLAMMLVLTVASISKVNAIEGSLATVSEDNSVKQRYA 60 M+ K SLSVA +LALSFALVLAMMLVLTV SIS+VNAI SL TVS+DN+VKQRYA Sbjct: 1 MKPAADKPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYA 60 Query: 61 INFRGSVHDRAIALRDLTLVGDAEVKDVIALINKLDADYQQSARPLDTVFSTMKVNADER 120 INFRGSVHDRAIALRDLTLVGD E+KDV ALI+KLDADYQ+SA+ LD +F+ M+V +ER Sbjct: 61 INFRGSVHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPEER 120 Query: 121 ASLERIKAVEARTMPLAAKAIALRTAGDVDGARQLLLTQVKPAFVEWLATINHFIDLEER 180 ASL+ IKAVEAR MPLAAK IA R++GDV+GARQL+L+Q KPAFV+WLA INHFID+EE Sbjct: 121 ASLDSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEES 180 Query: 181 MSQIESAKARSTAHGFQAFILVLLGAALVAGAVLATLITRSIRGALGAEPDEVKQLALAV 240 MSQ ESAKAR+ A F+AF+LVLL AALVAG VLA LITRSIRGALGAEPDEVK+LALAV Sbjct: 181 MSQAESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAV 240 Query: 241 DRGELYHAAAASRAGDGGKRQSIMAALSEMSGNLRNTVTHVRDAATGVATISAQIAAGNS 300 DRGELYHAAA AG R SIMA LSEMSGNLR+TVT VRDAA GVATIS+QIAAGN Sbjct: 241 DRGELYHAAALPLAGKTRAR-SIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNR 299 Query: 301 DLSARTEDQAASLEETASAMEQLTATVKQNDGHAREANQLARNASDIAKQGGAIVEEVVD 360 DL+ARTEDQAASLEETASAMEQLTATVKQND HAR+ANQLA NAS+IA+QGGAIV+ VVD Sbjct: 300 DLAARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVD 359 Query: 361 TMAAINSSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 420 TMAAIN SSRKIVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR Sbjct: 360 TMAAINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 419 Query: 421 SAAAAKEIKQLIDTSVGNVDTGTRLVERAGETMEQIVASVQQVTDVMGEISAASHEQSLG 480 SAAAAKE+KQLID SV NV+ GT LVE+AG+TMEQIVASVQQVTDVMGEIS+ASHEQSLG Sbjct: 420 SAAAAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLG 479 Query: 481 IEEVNKAIALMDQVTQHNAALVEEATAAVATLQEQAVNLTRAVGVFQLDAPDAAGLVAAP 540 IEEV+KAIALMDQVTQHNAALVE+A+AAVATLQEQAVNL +AVGVFQL+ PD Sbjct: 480 IEEVHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPD-------- 531 Query: 541 VPVPSPALNTVQVPLRVVPKLEVVRKAA 568 SP L T+ V + P L + +AA Sbjct: 532 ---QSPTLRTINV--KAAPALAMDARAA 554 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust. Identities = 255/541 (47%), Positives = 346/541 (63%), Gaps = 26/541 (4%) Query: 9 RSLSVAAQLALSFALVLAMMLVLTVASISKVNAIEGSLATVSEDNSVKQRYAINFRGSVH 68 ++L VA +LA FA ++A++ V++V + K+N I ++ + D +K R+A + R V+ Sbjct: 6 KNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVN 65 Query: 69 DRAIALRDLTLVGDAEVKDVI-ALINKLDADYQQSARPLDTVFSTMKVNADERASLERIK 127 ++ LR + + D E + +L+ +Q+ LD K+ A + ++ + K Sbjct: 66 EQIKYLRGIAI--DIENRPANEKRFAQLEVAVKQTKEALD------KITARQVTAVGQKK 117 Query: 128 AV---EARTMPLAAKA--IALRTAGDVDGARQLLLTQVKPAFVEWLATINHFIDLEERMS 182 A EAR A+KA +AL AG+ A + +L ++ +LA F D ++ Sbjct: 118 AKALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQL 177 Query: 183 QIESAKARSTAHGFQAFILVLLG--AALVAGAVLATLITRSIRGALGAEPDEVKQLALAV 240 Q E AKA A G A + L AA++A +L L+ RSI L E ++A V Sbjct: 178 QAEGAKA--VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPL----TEAVRVAENV 231 Query: 241 DRGELYHAAAASRAGDGGKRQSIMAALSEMSGNLRNTVTHVRDAATGVATISAQIAAGNS 300 G+L + G+ +M AL +M+ NL V+ VR + T S +IA+GN Sbjct: 232 AAGDLTTRIEPHSRDETGQ---LMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNL 288 Query: 301 DLSARTEDQAASLEETASAMEQLTATVKQNDGHAREANQLARNASDIAKQGGAIVEEVVD 360 DLSARTE QA SLEETASAME++T+TV+QN +AR+ANQ+A +AS+IA QGG IV VV Sbjct: 289 DLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVH 348 Query: 361 TMAAINSSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 420 TM IN SSRKIVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQR Sbjct: 349 TMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 408 Query: 421 SAAAAKEIKQLIDTSVGNVDTGTRLVERAGETMEQIVASVQQVTDVMGEISAASHEQSLG 480 SAAAAKEIK LI SVG V+ G+ LV +AG TMEQ+V+SV+ VTD++ EISAAS EQS G Sbjct: 409 SAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSG 468 Query: 481 IEEVNKAIALMDQVTQHNAALVEEATAAVATLQEQAVNLTRAVGVFQLDAPDAAGLVAAP 540 IEE+N+A+ MD+ TQ NAALVE+A AA ++QEQAV LT+++ +F+L+ AA + AAP Sbjct: 469 IEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE-QGAASIPAAP 527 Query: 541 V 541 V Sbjct: 528 V 528 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 355 bits (910), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 238/553 (43%), Positives = 338/553 (61%), Gaps = 21/553 (3%) Query: 10 SLSVAAQLALSFALVLAMMLVLTVASISKVNAIEGSLATVSEDNSVKQRYAINFRGSVHD 69 +L V +LAL F L+L +L ++ + + + +L +++ N+ + + R ++ Sbjct: 3 NLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQ 62 Query: 70 RAIALRDLTLV---GDAEVKD-VIALINKLDADYQQSARPLDTVFSTMKVNAD-ERASLE 124 RA+A+R++ L+ D +V+ +A KL AD + LD +F+T + ER L Sbjct: 63 RALAIRNIALLDEQADMQVESQTLARQEKLYAD---AYAALDKMFTTEAATTERERQLLV 119 Query: 125 RIKAVEARTMPLAAKAIALRTAGDVDGARQLLLTQVKPAFVEWLATINHFIDLEERMSQI 184 +IK EA T+PL AKA+ L A ++L+TQV+P W+ ++ + E++++ Sbjct: 120 QIKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDE 179 Query: 185 ESAKARSTAHGFQAFILVLLGAALVAGAVLATLITRSIRGALGAEPDEVKQLALAVDRGE 244 + AR+T + + AAL+ G + LI RSI LGAEP E + +A + G+ Sbjct: 180 AATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGD 239 Query: 245 LYHAAAASRAGDGGKRQSIMAALSEMSGNLRNTVTH-VRDAATGVATISAQIAAGNSDLS 303 L A R GD S+MA++ +M L N + H ++ AA ++ S QIA GN DLS Sbjct: 240 LT-ATVRVREGDSS---SLMASIEQMRYQL-NVIAHGIKSAAETISVASGQIAQGNFDLS 294 Query: 304 ARTEDQAASLEETASAMEQLTATVKQNDGHAREANQLARNASDIAKQGGAIVEEVVDTMA 363 RTE+QAASLEETA++ME+LT TV+QN HA EA +L+ A++ A G + VV TM Sbjct: 295 QRTEEQAASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMD 354 Query: 364 AINSSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 423 I +SS K+ DII VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 355 RITASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAV 414 Query: 424 AAKEIKQLIDTSVGNVDTGTRLVERAGETMEQIVASVQQVTDVMGEISAASHEQSLGIEE 483 AAKEIK+LI S+ +V G++LV AG+ M QIVASVQ+ ++M I+ A+ EQ GIE+ Sbjct: 415 AAKEIKELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQ 474 Query: 484 VNKAIALMDQVTQHNAALVEEATAAVATLQEQAVNLTRAVGVFQ------LDAP-DAAGL 536 +N A+ MDQVTQ NAALVEEA+AA +L +QA L + V VF+ L AP + A L Sbjct: 475 INTAMVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSLAAPLEQAAL 534 Query: 537 VAAPVPVPSPALN 549 P PAL+ Sbjct: 535 TRTPGMPGMPALH 547 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 352 bits (902), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 238/531 (44%), Positives = 333/531 (62%), Gaps = 8/531 (1%) Query: 8 RRSLSVAAQLALSFALVLAMMLVLTVASISKVNAIEGSLATVSEDNSVKQRYAINFRGSV 67 + + + +L L FA V+ +++++T I ++ ++G V E + + +V Sbjct: 2 KSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETV 61 Query: 68 HDRAIALRDLTLVGDAEVKDVIA-LINKLDADYQQSARPLDTVFSTMKVNADE-RASLER 125 +R+I+LR+L L E D+ A I Y+ +A+ L +F+ +DE +A+L + Sbjct: 62 GERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPK 121 Query: 126 IKAVEARTMPLAAKAIALRTAGDVDGARQLLLTQVKPAFVEWLATINHFIDLEERMSQIE 185 I A ++ L +A+ + Q L Q P W + LE+++++ E Sbjct: 122 IAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNK-E 180 Query: 186 SAKARSTAHGFQAFILVLLGAALVAGAVLATL-ITRSIRGALGAEPDEVKQLALAVDRGE 244 +A+A + A+ +++L+ A V AVLA +TR + LG EPD Q+A + G+ Sbjct: 181 AAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGD 240 Query: 245 LYHAAAASRAGDGGKRQSIMAALSEMSGNLRNTVTHVRDAATGVATISAQIAAGNSDLSA 304 L +RAGD S+MAA+ M L V VR + + T S++IA GN DLS Sbjct: 241 LA-VVIDTRAGD---HDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSG 296 Query: 305 RTEDQAASLEETASAMEQLTATVKQNDGHAREANQLARNASDIAKQGGAIVEEVVDTMAA 364 RTE QA +LEETAS+MEQL +TVKQN +A +AN LA ASD+A QGG+IV +VV TM + Sbjct: 297 RTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQS 356 Query: 365 INSSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAA 424 IN+SS+K+ DI+ VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+A Sbjct: 357 INASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 416 Query: 425 AKEIKQLIDTSVGNVDTGTRLVERAGETMEQIVASVQQVTDVMGEISAASHEQSLGIEEV 484 AKEIK LI SVG V+ G++LVE+AG TM IV S+++VTDVM EI+ A+ EQS GIE+V Sbjct: 417 AKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQV 476 Query: 485 NKAIALMDQVTQHNAALVEEATAAVATLQEQAVNLTRAVGVFQLDAPDAAG 535 N+AI +D +TQ NAALVE+A AA +LQEQA L + V VF+LDA A G Sbjct: 477 NEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHG 527 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 335 bits (859), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 240/546 (43%), Positives = 338/546 (61%), Gaps = 25/546 (4%) Query: 9 RSLSVAAQLALSFALVLAMMLVLTVASISKVNAIEGSLATVSEDNS----VKQRYAINFR 64 ++L + +LA+ F +L +M V+ + ++ GS+ ++D + K+R A+ + Sbjct: 2 KNLKIGVRLAIGFIALLMLMAVMVALGVWRL----GSIGDATDDMTRIALKKERDAVQWH 57 Query: 65 GSVHDRAIALRDLTLVGDAEVKDVIALINKLDADYQQSAR--PLDTVFSTMKVNADERAS 122 ++ + + R ++ + ++DA QSAR L +A+E+ Sbjct: 58 AAIKENGV--RTFAVMKSDDDAFQAYFQKQIDA---QSARISQLQKEVEAAITDAEEKRL 112 Query: 123 LERIKAVEARTMPLAAKAIALRTAGDVDGARQLLLTQVKPAFVEWLATINHFIDLEER-M 181 + + + A ++TAGD AR++ T + ++ + + D +++ + Sbjct: 113 FDEVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVI 172 Query: 182 SQIESAKARSTAHGFQAFILVLLGAALVAGAVLATLITRSIRGALGAEPDEVKQLALAVD 241 Q +A R G ++ +L L +V GA LA L+TRSI L ++ +A V Sbjct: 173 DQTAAAINRDYRSG-RSMLLALGAIEIVLGAALAWLLTRSITRPL----NQAVTIAETVA 227 Query: 242 RGELYHAAAASRAGDGGKRQSIMAALSEMSGNLRNTVTHVRDAATGVATISAQIAAGNSD 301 G+L +S + GK ++AAL M+GNL + V VR + T S +IA GN D Sbjct: 228 AGDLTSRIDSSSRDETGK---LLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLD 284 Query: 302 LSARTEDQAASLEETASAMEQLTATVKQNDGHAREANQLARNASDIAKQGGAIVEEVVDT 361 LSARTE QA SLEETASAMEQLT+TVKQN +AR+AN+LA +AS +A QGGA+V++VV T Sbjct: 285 LSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVAT 344 Query: 362 MAAINSSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRS 421 M AI++SS+KI DIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS Sbjct: 345 MGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 404 Query: 422 AAAAKEIKQLIDTSVGNVDTGTRLVERAGETMEQIVASVQQVTDVMGEISAASHEQSLGI 481 A+AAKEIKQLID SV VD G+RLV RAG+TM+++V SV +VT V+ EI+ AS EQS GI Sbjct: 405 ASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGI 464 Query: 482 EEVNKAIALMDQVTQHNAALVEEATAAVATLQEQAVNLTRAVGVFQLDAPDAAGLVAAPV 541 E+VN AI +D+ TQ NAALVE+A AA ++Q+QA +LT AV VF+L+ DA L A Sbjct: 465 EQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLE-DDAQVLAVAVQ 523 Query: 542 PVPSPA 547 SP+ Sbjct: 524 RGTSPS 529 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,209,959 Number of extensions: 40839 Number of successful extensions: 630 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 71 Length of query: 568 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 478 Effective length of database: 1,193,720 Effective search space: 570598160 Effective search space used: 570598160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)