BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0054.p (591 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314056|ref|YP_003778148.1| ABC transporter permease and AT... 1066 0.0 gi|300312125|ref|YP_003776217.1| ABC transporter permease and AT... 345 4e-96 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 76 1e-14 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 71 2e-13 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 70 5e-13 >gi|300314056|ref|YP_003778148.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 1066 bits (2758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/576 (90%), Positives = 546/576 (94%) Query: 14 NRATRAEIWRLIKPFWVSEEKWKAWALLLAILALNLGMVYINVRLNSWNRDMYNVLQSRD 73 NRA+RAEIW LI+PFWVSEEKWKAWALLL+I+ALNLGMVYINVRLNSWNRDMY+VLQSRD Sbjct: 21 NRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVYINVRLNSWNRDMYDVLQSRD 80 Query: 74 YPQFKSLLWQFSGLAFVFVAIAIYSVYLKQALQIRWRYWMSTRYLDRWLAHRAYYRIEQG 133 Y QFK+LLWQFS LAF+FVAIAIYSVYLKQALQIRWRYWMS RYLDRWLAHRAYYRIEQG Sbjct: 81 YAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWMSQRYLDRWLAHRAYYRIEQG 140 Query: 134 QEGRLSDNPDQRIAEDLHALTSDTLSLVLGFISSSVTLFSFIHILWSVSGPLSFTALGQS 193 Q+GRLSDNPDQRIAEDL ALTS TLSLVLGFISSSVTLFSFIHILW+VSGPL+F+ALGQS Sbjct: 141 QQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFSFIHILWAVSGPLTFSALGQS 200 Query: 194 WVIPGYMVWFVIAYAAIGSGVVWWIGRPLVGLSFNQERFEANFRFGLIRVREHAEAVALY 253 WVIPGYMVWFVIAYA +GSG+VWWIGRPLVGLSF+QERFEANFRFGLIRVREHAEAVALY Sbjct: 201 WVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFEANFRFGLIRVREHAEAVALY 260 Query: 254 RGEPQERAQLTARLDDIRENWWNIMRLTKKLNVAVNFYGQFAVIFPMLVSAPRYFSGAIS 313 RGEPQE AQLTARLDDIR NWW IMRLTK LNVAVNFYGQFAVIFPMLVSAPRYFSGAIS Sbjct: 261 RGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQFAVIFPMLVSAPRYFSGAIS 320 Query: 314 LGVLMQISDAFGQVQDALSWFINAFTTLASWKASINRLAGFHADVERAAGMPRTLAVTQH 373 LGVLMQIS+AFGQVQDALSWFINAFTTLASWKASINRLAGF+ADVERAAGMPR + V H Sbjct: 321 LGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAGFNADVERAAGMPRHIDVAPH 380 Query: 374 GGSAVTLEGVQLSFPDGSLMLRRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEG 433 GSAVTL+G+QLSFPDG+ M+ LDARVESGEHVLISGPSGCGKSTL+RAMADIWPYG+G Sbjct: 381 AGSAVTLQGLQLSFPDGAPMMHALDARVESGEHVLISGPSGCGKSTLMRAMADIWPYGQG 440 Query: 434 RIALPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFEDALITRYLGLCRLAHLASRLDV 493 RI LPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSF+DALITRYLGLCRLAHLA RLDV Sbjct: 441 RIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDALITRYLGLCRLAHLADRLDV 500 Query: 494 AANWSQALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGETEEALYAALPRELPGVTVI 553 AANWS ALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG+TEE LYAALPRELPGVTVI Sbjct: 501 AANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGQTEEVLYAALPRELPGVTVI 560 Query: 554 SIAHRETLARFHDVRWKFVPPAAGEGAGHRVEALPI 589 SIAHRETLARFHDVRW FV P GEG GHRVE P+ Sbjct: 561 SIAHRETLARFHDVRWHFVAPGEGEGGGHRVEMAPV 596 >gi|300312125|ref|YP_003776217.1| ABC transporter permease and ATPase components protein [Herbaspirillum seropedicae SmR1] Length = 594 Score = 345 bits (886), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 200/571 (35%), Positives = 306/571 (53%), Gaps = 3/571 (0%) Query: 18 RAEIWRLIKPFWVSEEKWKAWALLLAILALNLGMVYINVRLNSWNRDMYNVLQSRDYPQF 77 R W L K +W S E + L I+ VY ++R+N W Y+ + S + Sbjct: 23 RTSTWWLFKSYWTSREAPVSALLAAFIVGSGFVGVYFSLRVNQWTGKFYDAIGSGRFGTI 82 Query: 78 KSLLWQFSGLAFVFVAIAIYSVYLKQALQIRWRYWMSTRYLDRWLAHRAYYRIEQGQEGR 137 +LL F GL V +AI + L++RWR W++T +D+W AY+RIE+ + Sbjct: 83 PALLTLFLGLIMVAATLAISASVAADVLKLRWRTWLTTTLIDQWTRSGAYFRIERD---K 139 Query: 138 LSDNPDQRIAEDLHALTSDTLSLVLGFISSSVTLFSFIHILWSVSGPLSFTALGQSWVIP 197 L DN DQRI+ED+ T+++ I V+ +F +LW +SG + IP Sbjct: 140 LLDNADQRISEDVKLFVDYTVTITSHLIHVPVSAVTFSIVLWELSGNYLLELGHLAITIP 199 Query: 198 GYMVWFVIAYAAIGSGVVWWIGRPLVGLSFNQERFEANFRFGLIRVREHAEAVALYRGEP 257 YM++ V Y+ + +GR L+ ++ Q++ EA+FR ++++RE AE +A Y G Sbjct: 200 AYMLFAVYLYSGSTLLLTHLLGRSLIPVNIRQQKVEADFRALMVQIREGAEQIAFYDGAS 259 Query: 258 QERAQLTARLDDIRENWWNIMRLTKKLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVL 317 E ++L + IR N W I+R+T ++ V GQ + I P+L+ P+ +G ++LG + Sbjct: 260 VEASRLRSTFASIRANTWRIIRVTAQVMFGVQVPGQISSILPVLLVLPQLMAGTMTLGGM 319 Query: 318 MQISDAFGQVQDALSWFINAFTTLASWKASINRLAGFHADVERAAGMPRTLAVTQHGGSA 377 M++S AFG V L++F A+ + A+W+A + RL E + + + + Sbjct: 320 MRVSAAFGSVSSTLAYFPQAYQSFAAWRAVVRRLLALLDANEIKSPTFELTVLQRPQQTT 379 Query: 378 VTLEGVQLSFPDGSLMLRRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIAL 437 + + + L+ P G+ + R V+ G LI G SG GKSTL+RA+A IWP+G G I + Sbjct: 380 IEVGALTLTDPHGNPLSRIPAFSVKHGARCLIRGRSGSGKSTLLRALAGIWPFGIGSITV 439 Query: 438 PQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFEDALITRYLGLCRLAHLASRLDVAANW 497 P MF+PQ+SY+P+G+LR AL+YP AE DAL L LA LD W Sbjct: 440 PARTSMMFVPQKSYVPVGSLRQALAYPGAETDVSDALAQDILAAVGLAQFLPLLDQPDRW 499 Query: 498 SQALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGETEEALYAALPRELPGVTVISIAH 557 LS GEQQRLAF R+ + RP +F+DEA+SA+D E+E+ +Y+ L LP T+IS+AH Sbjct: 500 GGRLSGGEQQRLAFARILIARPDHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAH 559 Query: 558 RETLARFHDVRWKFVPPAAGEGAGHRVEALP 588 R+ +A FHD P A V P Sbjct: 560 RKEVAAFHDQFVDLTPDVVATSAPGAVSNQP 590 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 38/310 (12%) Query: 278 MRLTKKLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVLMQISDAFGQVQDALSWFI-- 335 MRL V + +I VS + G + +G + + ++ W + Sbjct: 261 MRLVSGFEVVNHLLNMVLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWE 320 Query: 336 --NAFTTLASWKASINRLAGFHADVERAAGMPRTLAVTQHGGSAVTLEGVQLSFPDGSL- 392 + F + + + IN LA H DV+ A + L V+Q + EGV S+ + Sbjct: 321 MSSLFEHVGTVQDGINTLARAH-DVKDAPD-AQPLKVSQ---GELRFEGVSFSYGGAAPR 375 Query: 393 -MLRRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIAL--------PQD--- 440 ++ +LD + GE + + G SG GKST++ + + GRI + QD Sbjct: 376 PVVDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLR 435 Query: 441 APAMFLPQRSYLPIGTLRAALSYPAAEGSFEDALITR---------YLGLCRLAHLASRL 491 A + Q + L ++R ++Y + S DA +T ++G LA R Sbjct: 436 AQIGMVTQDTSLLHRSVRENITYGRPDAS--DAEMTHAAERAEAHDFIG--TLADAKGRT 491 Query: 492 DVAANWSQ---ALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGETEEALYAALPRELP 548 A+ + LS G++QR+A RV L ++ LDEA+SA+D E E A+ +L + + Sbjct: 492 GYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLME 551 Query: 549 GVTVISIAHR 558 G TV++IAHR Sbjct: 552 GKTVVAIAHR 561 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/237 (29%), Positives = 104/237 (43%), Gaps = 34/237 (14%) Query: 361 AAGMPRTLAVTQHGGSA------VTLEGVQ-------LSFPDGS-LMLRRLDARVESGEH 406 AAG R + H S V LE VQ + F G+ ++R + + GE Sbjct: 473 AAGAKRIFDILDHVSSVPEPANPVHLEKVQGAIEVRNIGFRYGNRAVIRNMSLSIAPGEM 532 Query: 407 VLISGPSGCGKSTLIRAMADIWPYGEGRIALPQDAPAMFLP------------QRSYLPI 454 + + G SG GKST++ + + EG I + LP Q +L Sbjct: 533 IGLVGHSGSGKSTMVNLICRFYDVSEGAIRI-DGVDIRSLPISEYRRNIGLVLQEPFLFF 591 Query: 455 GTLRAALSYPAAEGSFEDALITRYLG-----LCRLAHLASRLDVAANWSQALSPGEQQRL 509 GT+ ++Y E + E+ + + RL L QALS GE+QR+ Sbjct: 592 GTIAENIAYGKPEATREEIIAAARAAHAHEFILRLPQGYDSL--VGERGQALSGGERQRI 649 Query: 510 AFVRVFLNRPRLVFLDEASSAMDGETEEALYAALPRELPGVTVISIAHRETLARFHD 566 + R L PR++ LDEA+S++D TE+ + AL + G T I+IAHR + R D Sbjct: 650 SIARALLIDPRILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKAD 706 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 85/191 (44%), Gaps = 34/191 (17%) Query: 392 LMLRRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALP-QDAPAMFLP--- 447 L L+ ++ VE+GE + G SG GKSTL+ + + G I L +D + LP Sbjct: 350 LALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLR 409 Query: 448 -------QRSYLPIGTLRAALSYPAAE------------GSFEDALITRYLGL-CRLAHL 487 Q + L TL A ++Y A D + GL RL Sbjct: 410 QQIAMVNQNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDN 469 Query: 488 ASRLDVAANWSQALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDGETEEALYAALPREL 547 SRL S G++QR+A R ++ LDEA+SA+D E+E A+ AAL R + Sbjct: 470 GSRL----------SGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAALDRLM 519 Query: 548 PGVTVISIAHR 558 G T IAHR Sbjct: 520 QGRTTFVIAHR 530 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,955,509 Number of extensions: 85784 Number of successful extensions: 701 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 691 Number of HSP's successfully gapped: 29 Length of query: 591 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 500 Effective length of database: 1,188,985 Effective search space: 594492500 Effective search space used: 594492500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)