BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0053.p
         (306 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314055|ref|YP_003778147.1| branched-chain amino acid amino...   538   e-154
gi|300310002|ref|YP_003774094.1| branched-chain amino acid amino...    92   7e-20

>gi|300314055|ref|YP_003778147.1| branched-chain amino acid
           aminotransferase/4-amino-4-deoxychorismate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  538 bits (1387), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/282 (92%), Positives = 271/282 (96%)

Query: 25  MNDPIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYRRKAFRGQHHLARLFRSLDS 84
           MN+ IVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMY RKAFRG+ HLARLFRSL  
Sbjct: 1   MNEAIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYGRKAFRGKQHLARLFRSLAG 60

Query: 85  IGIPNPHDEAGWNALIDQVVQANGLDDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 144
           IGIPNPHDEAGW  LIDQVVQANGL DQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM
Sbjct: 61  IGIPNPHDEAGWMDLIDQVVQANGLQDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTNPM 120

Query: 145 ALPPAASIEKGVACVSMEDRRWLNCQIKSTSLLGNVLAAQFAAEHQVTEAIQFRDGYLSE 204
           ALP AA +EKGVACV+MEDRRWLNCQIKSTSLLGNVLAAQFAAE++VTEAIQFRDG+LSE
Sbjct: 121 ALPSAAMLEKGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENEVTEAIQFRDGFLSE 180

Query: 205 ASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRITREEVLAADELM 264
           AS+SNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGI LESRRITREEVLAADELM
Sbjct: 181 ASASNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIALESRRITREEVLAADELM 240

Query: 265 ISSASKEVLPVVTLDGQPVGSGQPGPVFAKVYAAYQAAKARL 306
           ISSASKEVLPVVTLDGQPVGSG+PGPVFA+VYAAYQAAKARL
Sbjct: 241 ISSASKEVLPVVTLDGQPVGSGRPGPVFARVYAAYQAAKARL 282


>gi|300310002|ref|YP_003774094.1| branched-chain amino acid
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 125/279 (44%), Gaps = 11/279 (3%)

Query: 27  DPIVYLNGELTPLSEARVPVLDRGFIFGDGIYEVIPMYRR----KAFRGQHHLARLFRSL 82
           D  ++ +GEL    +A V VL     +G G++E +  Y+       FR Q H  RL  S 
Sbjct: 8   DGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTRRLRNSA 67

Query: 83  DSIGIPNPHDEAGWNALIDQVVQANGLDDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTN 142
               +  P+D         QVV+ N L+   I   +  G  K   +     +   +   +
Sbjct: 68  KIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHVAVAAWS 127

Query: 143 PMALPPAASIEKGVAC-VSMEDRRWLNCQIKSTSLLG----NVLAAQFAAEHQVTEAIQF 197
             A      + KG+    S   R  +N  +      G    ++LA Q A      EA+  
Sbjct: 128 WGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGYDEALLL 187

Query: 198 -RDGYLSEASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRITREE 256
             +GY+SE S  NV++VK+GKI  P   +  L+GI    +  +  + GI +  +RITR+E
Sbjct: 188 DTEGYVSEGSGENVFIVKNGKIYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDE 246

Query: 257 VLAADELMISSASKEVLPVVTLDGQPVGSGQPGPVFAKV 295
           +  ADE   +  + E+ P+  LD + +GSG  GPV  K+
Sbjct: 247 MYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKL 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 859,064
Number of extensions: 34753
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,217,395
Effective search space: 269044295
Effective search space used: 269044295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)