BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0051.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314053|ref|YP_003778145.1| amidophosphoribosyltransferase ...   191   3e-50

>gi|300314053|ref|YP_003778145.1| amidophosphoribosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  191 bits (484), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 121/157 (77%)

Query: 1   MQWHTRRTEAGEALYQLKYRQQQRYVLPLAQAVQSHILPLLPGFGLIVPMASSHVRRVQP 60
           +QW+TRR+E GEALYQ KYR QQ +V+PLAQAVQSHILPLLP F LIVPM +S +R  QP
Sbjct: 36  LQWNTRRSEVGEALYQFKYRSQQHHVVPLAQAVQSHILPLLPDFRLIVPMPASTLRTRQP 95

Query: 61  VAAIAHALGHLVGKPVLALLSKAKDAALLKDLRTRAEKDALLANTLILNRLITGEGRWDT 120
           V A+AHAL  L  KPV  LLSK+     LKDL  RA+KDA LA  L L+RL+ G G W+ 
Sbjct: 96  VVALAHALATLACKPVCRLLSKSVGKYPLKDLSRRADKDAALAGLLKLHRLVAGPGGWNI 155

Query: 121 LLLDDLYDSGASVDAACDTLRAYEKIGDIFVATLTWR 157
           LLLDDLYDSGAS+DAA D LR YEKI +I+VATLTWR
Sbjct: 156 LLLDDLYDSGASLDAATDVLRTYEKIHEIYVATLTWR 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 416,571
Number of extensions: 14152
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)