BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0046.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314048|ref|YP_003778140.1| lipoate synthase [Herbaspirillu...   688   0.0  

>gi|300314048|ref|YP_003778140.1| lipoate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 330

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/330 (99%), Positives = 330/330 (100%)

Query: 1   MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT 60
           MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT
Sbjct: 1   MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT 60

Query: 61  TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 120
           TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD
Sbjct: 61  TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 120

Query: 121 PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDGGAAHFAACIQRVRELSPETRIEILT 180
           PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDGGAAHFAACIQRVRELSPETRIEILT
Sbjct: 121 PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDGGAAHFAACIQRVRELSPETRIEILT 180

Query: 181 PDFRGRMDRALEILKMAPPDVMNHNLETAPRLYKEARPGSDYEYSLSLLKRFKDLHPEVP 240
           PDFRGRMDRALEILKMAPPDVMNHNLETAPRLYKEARPGSDYEYSLSLLKRFKDLHP+VP
Sbjct: 181 PDFRGRMDRALEILKMAPPDVMNHNLETAPRLYKEARPGSDYEYSLSLLKRFKDLHPDVP 240

Query: 241 TKSGIMVGLGETDEEVLQVMRDMRAHNVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 300
           TKSGIMVGLGETDEEVLQVMRDMRAHNVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE
Sbjct: 241 TKSGIMVGLGETDEEVLQVMRDMRAHNVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 300

Query: 301 EAYKMGFVHAAVGAMVRSSYHADQQAHGLV 330
           EAYKMGFVHAAVGAMVRSSYHADQQAHGLV
Sbjct: 301 EAYKMGFVHAAVGAMVRSSYHADQQAHGLV 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,075,049
Number of extensions: 45269
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)