BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0040.p (946 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314042|ref|YP_003778134.1| signal transduction protein con... 1776 0.0 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 506 e-144 gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 441 e-124 gi|300311453|ref|YP_003775545.1| signal transduction containing ... 401 e-112 gi|300312026|ref|YP_003776118.1| signal transduction protein con... 397 e-111 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 1776 bits (4601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 863/947 (91%), Positives = 906/947 (95%), Gaps = 2/947 (0%) Query: 1 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVQLDFERRAGLRAFTIQRGLE 60 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAV LDFERRAGLRAFTIQRGLE Sbjct: 1 MQRVINKLGATLSASLTLMLGLCATATVFVATSHLEEDAVSLDFERRAGLRAFTIQRGLE 60 Query: 61 EAVQVQSVVNHFYATVGDPTREQFESFTRPLLERYPYVRAFSVQRFVADEDRLVFEALRQ 120 EAVQVQSVVNHFYATVGDPTR+QFE+FTRPLLERYPYVRAFSVQRFV+DEDR VFEALRQ Sbjct: 61 EAVQVQSVVNHFYATVGDPTRDQFENFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQ 120 Query: 121 GAKPGFEITALDGDRT--VRASQQPTYLVVDYVEPVAGNEAALGLDVSRNPAIMGALDAA 178 GA+PGF+ITAL + V A QQP+YLVVD++EPV GNEAALGLDVSRN IMGAL AA Sbjct: 121 GARPGFQITALAEGKVEPVPAPQQPSYLVVDFIEPVPGNEAALGLDVSRNAEIMGALGAA 180 Query: 179 VVSGNPSSTPPIRLAQTGPDERGLLVIQPVYRGGVQPTDTAARRALLVGDTTAVLELNGL 238 + SG P+STPP+RLAQ GPDERGLLVIQPVYRGGVQPTD ARRALLVGDT+AVLELNGL Sbjct: 181 LASGRPASTPPLRLAQFGPDERGLLVIQPVYRGGVQPTDQLARRALLVGDTSAVLELNGL 240 Query: 239 VQKILDGAGLMSDHEIGLRLYVGPQADPANLVYRHDSQARAMQWMDQVIKPGSFFRHPST 298 V+KILD AGLM+DH+IGLR+YVG QA+ NLVYRHDS + W+D ++KPG+ FRHPST Sbjct: 241 VRKILDSAGLMADHDIGLRIYVGAQAEGRNLVYRHDSAPQEAHWLDHLLKPGTLFRHPST 300 Query: 299 TITSFDIAGQTWHMEISIPPRSVFSDHYGSLLIGLVGVIASLLGAAYMRALSMRSHRVQQ 358 T++SFDIAGQTWH+EIS+PPRS+F+DHYGSLLI LVGVIASLLGAAYMRALSMRSHR+QQ Sbjct: 301 TVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRIQQ 360 Query: 359 LVEDKTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYAIEYVN 418 LVE++TAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDY IEYVN Sbjct: 361 LVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYTIEYVN 420 Query: 419 PAFARITGYSSGEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW 478 PAFARITGYSS EAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW Sbjct: 421 PAFARITGYSSTEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELW 480 Query: 479 NDFYIAPVRDESGVVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 538 NDFYIAPVRDESG VTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA Sbjct: 481 NDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 540 Query: 539 IGTAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD 598 IG AERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD Sbjct: 541 IGVAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD 600 Query: 599 EFIMILPEQDELSLDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIK 658 EFIMILPEQDEL+LDTRSLQRIMDAVAAPVTLGGHTLFMTCS+GVACYPNDGTDGETLIK Sbjct: 601 EFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYPNDGTDGETLIK 660 Query: 659 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG 718 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG Sbjct: 661 HADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASG 720 Query: 719 RVVGSEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDI 778 RV+GSEALIRW HPQLGMVSPARFIGLAEETGLILPIGAWVLR ACTQCRQWQL G+ DI Sbjct: 721 RVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQCRQWQLGGYADI 780 Query: 779 SVSVNLSVGQFLQKDLVSSIADVLQDTGLPPASLEIELTESLMMTDVEHAIGILAGLKKL 838 SVSVNLSVGQFLQKDLVSSIADVL+DTGLPP SLE+ELTESLMMTDVEHAIGILAGLKKL Sbjct: 781 SVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKKL 840 Query: 839 GIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR 898 G+RLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR Sbjct: 841 GVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLR 900 Query: 899 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAAEKFEQILREERVI 945 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPV A+KFEQILR++RV+ Sbjct: 901 VIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQDRVM 947 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 506 bits (1304), Expect = e-144, Method: Compositional matrix adjust. Identities = 285/573 (49%), Positives = 370/573 (64%), Gaps = 11/573 (1%) Query: 377 DIKARRLAERALR---LRHQAIEASANAILILSAQEPDYAIEYVNPAFARITGYSSGEAV 433 D+ R+ A +AL+ R+++I NAI + PD VNPA ARI GY S E + Sbjct: 123 DVTERKEAAQALQEAERRYRSI--FENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180 Query: 434 GKSIRFLEGR-DSDPEGFETVWIAMREQRE-HNVVLRNYHKDGSELWNDFYIAPVRDESG 491 +R + + +PE + M EQ N R Y +DG +W V DE+G Sbjct: 181 IVGLRDISHQLYVEPERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDEAG 240 Query: 492 VVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGTAERQKQALWV 551 ++ + + IT K +EAE+ QA+ D LTGL NR+ML HL++A+ A RQK AL Sbjct: 241 KLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGALTA 299 Query: 552 V-FVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDEL 610 V FVDLD+FKF+ND+LGH+ GD LL+TVA RL+A +READ VAR GGDEF+++L Q E Sbjct: 300 VAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQTEG 359 Query: 611 SLD-TRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQ 669 +QRI+ AVA P G +T SIGV+ YP DG D E+L+KHAD AMYR K+ Sbjct: 360 EAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRAKE 419 Query: 670 TGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGSEALIRW 729 GRNNFQF+ P M+ Q RL + +LR ALD EF L+YQPK+ L GR++G+EALIRW Sbjct: 420 QGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALIRW 479 Query: 730 LHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDISVSVNLSVGQF 789 PQ GMV P RFI AEE GLI+PIG WVLRTAC Q + WQ AG I V+VNLS Q Sbjct: 480 ESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGLPPIPVAVNLSPRQ- 538 Query: 790 LQKDLVSSIADVLQDTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGT 849 L + L +A VL +GL + LE+E+TE+++M D E ++ L LK+LG+++S+DDFGT Sbjct: 539 LNQSLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGT 598 Query: 850 GYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQ 909 GYSSL+YL+RFP+D LKID+SFVRDI DAD AAI +IISLA L LRVIAEGVE +EQ Sbjct: 599 GYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVEDEEQ 658 Query: 910 LDYLRHYGCDEIQGYLFSPPVAAEKFEQILREE 942 +L+ CDE+QGY F P+ F + E+ Sbjct: 659 HAFLKENACDEVQGYYFGKPMEVAVFTAWMSEQ 691 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust. Identities = 258/586 (44%), Positives = 349/586 (59%), Gaps = 37/586 (6%) Query: 375 SDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYAIEYVNPAFARITGYSSGEAVG 434 S DI R+ E LR+ A + S +LI A + I VN AF ITGYS+ E VG Sbjct: 461 SRDITDRKQIEAELRISAVAFD-SREGMLITDA---NSKILRVNKAFTEITGYSAEEIVG 516 Query: 435 KSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHKDGSELWN-----DFY-----IA 484 K L P F+ MRE +R + K E+W+ + Y I+ Sbjct: 517 KHPNLLRSDRHGPAFFQE----MRES------IRRFGKWQGEIWDRRKNGEVYPEWLTIS 566 Query: 485 PVRDESGVVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGTAER 544 V+++ VTH+V+ +DI+ K E + A D LT L NR +L L+QAI + R Sbjct: 567 AVKNKDQQVTHYVSTHHDISDRKLAEERIRELAFFDALTRLPNRTLLLDRLKQAIALSLR 626 Query: 545 QKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMIL 604 K ++F+DLD FK +NDT+GH+ GDTLL+ VA RL A VRE DTVAR+GGDEF+++L Sbjct: 627 TKTCAALLFIDLDHFKTLNDTIGHEKGDTLLKQVAQRLLANVRENDTVARVGGDEFVVVL 686 Query: 605 PE----QDELSLDTRSL-QRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKH 659 Q E + TR++ ++I+ A+ + L T SIG + + L+K Sbjct: 687 EGLNELQQEAATQTRAIGEKILTALGSTYQLDDVEYRTTASIGATVFLGRAASVDELMKQ 746 Query: 660 ADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGR 719 AD+AMY+ K+TGRN +F+ PAM LER +E LR A+D + LLHYQP+V + GR Sbjct: 747 ADLAMYKAKETGRNALRFFDPAMQTAVLERATLEAGLRKAIDGNQLLLHYQPQV-VEGGR 805 Query: 720 VVGSEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQW----QLAGH 775 V G+E L+RW HPQ GMV P FI LAEETGLIL +G WVL TAC Q W Q+A Sbjct: 806 VTGAEVLVRWQHPQRGMVPPGDFIPLAEETGLILSLGNWVLETACRQLATWAAQPQMA-- 863 Query: 776 EDISVSVNLSVGQFLQKDLVSSIADVLQDTGLPPASLEIELTESLMMTDVEHAIGILAGL 835 D+S++VN+S Q + D V ++ D ++ TG P L++ELTESL++ +VE I + L Sbjct: 864 -DLSIAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFAL 922 Query: 836 KKLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHL 895 K G+ S+DDFGTGYSSL+YLKR P++ LKID+SFVRD+ ID +DA+I +I++LA+ L Sbjct: 923 KAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSL 982 Query: 896 KLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAAEKFEQILRE 941 L VIAEGVETD Q +L GC QGY F PV E FE+ +E Sbjct: 983 GLGVIAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVEAFEKFAQE 1028 Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 123/485 (25%), Positives = 190/485 (39%), Gaps = 72/485 (14%) Query: 69 VNHFYATVGDPTREQFESFTRPLL--ERYPYVRAFSVQRFVADEDRLVFEAL--RQGAKP 124 V A G R QF + + L + ++A +V+ +V A RQG + Sbjct: 65 VQGLVAATGAIDRSQFRDYVQALNLDANFSGIQAIAVEEWVPAAALPAHLARMERQGLEG 124 Query: 125 GFEITALDGDRTVRASQQPTYLVVDYVEPVAGNEAALGLDVSRNPAIMGALDAAVVSGNP 184 G++I G+R+ A PT L YV N G D +P A++ A SG Sbjct: 125 GYQIRPA-GERSAYA---PTVLREPYV---GRNRTPFGFDQWSDPVRRSAMEKARDSGMA 177 Query: 185 SSTPPIR-LAQTGPDERGLLVIQPVYRGGVQPTDTAARRALLVGDTTAVLELNGLVQKIL 243 + + + LA G ++ P+Y G PT A RRA LVG A ++ ++ + Sbjct: 178 TISGKVEVLAADGQRYPTFMMYLPLYERGKPPTTIAQRRASLVGWVHATFRMSDVIASLY 237 Query: 244 DGAGLMSDHEIGLRLYVGPQADPANLVYRHDSQARAMQWMDQVIKPGSFFRHPSTTITSF 303 + H I LY G QA P L+Y+ A P T S Sbjct: 238 G----ENSHTIVFSLYDGVQATPQALLYQSRQHEEA----------------PQATRLSA 277 Query: 304 D----IAGQTWHMEISIPPRSVFSDHYG---SLLIGLVGVIASLLGAAYMRALSMRSHRV 356 D + W +++ + F +G LI G+ ++ + + A M S RV Sbjct: 278 DEYVVVGNHNW--TLTLRTNAAFHAQFGRNAEPLIATTGI--AMSLSLALLAWLMVSSRV 333 Query: 357 Q--QLVEDKTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPDYAI 414 + +L + TAELR + RA+ + + N + D Sbjct: 334 RAVRLAQKMTAELRASEEQF-----------RAI------ADCTVNWEVWWGL---DGRP 373 Query: 415 EYVNPAFARITGYSSGE--AVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLRNYHK 472 ++N A TGY+ E A+ I + + +P + M Q+ +V LR K Sbjct: 374 RWINHAVLDYTGYTVEECLAMDDFIGTIAHPEDEPRIRAELARCMDGQKREDVELRCVRK 433 Query: 473 DGSELWNDFYIAPVRDESGVVTHFVAALYDITSMKRYEAELEFQA-SRDTLTGLI----N 527 DGS W AP+ D G T F + DIT K+ EAEL A + D+ G++ N Sbjct: 434 DGSVFWLALSCAPIHDAQGRFTGFRTSSRDITDRKQIEAELRISAVAFDSREGMLITDAN 493 Query: 528 RHMLR 532 +LR Sbjct: 494 SKILR 498 >gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 683 Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/538 (42%), Positives = 325/538 (60%), Gaps = 8/538 (1%) Query: 409 EPDYAIEYVNPAFARITGYSSGEAVGKSIRFLEGRDSDPEGFETVWIAMREQREHNVVLR 468 +P I N ++ GYS+ EA+G+++ FL + + + +++ E + +R Sbjct: 139 DPAGFITSWNRGAEQLFGYSAMEAIGRNVLFLYENEDEEDSLHDLFL---EHGGREMEVR 195 Query: 469 NYHKDGSELWNDFYIAPVRDESGVVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINR 528 K G W ++ +RD++G + L DIT K E + A D LTGL NR Sbjct: 196 RRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNR 255 Query: 529 HMLRHHLEQAIGTAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVRE 588 +L ++QA+ A + V+F+DL+RFK +NDTLGH AGD LL VA RLR A+RE Sbjct: 256 TLLTRTVDQALEEARHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAMRLRRALRE 315 Query: 589 ADTVARLGGDEFIMILPEQDELSLDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPN 648 D VARLG DEF + L D+ S Q+++ P + GH L + SIGV+ YP Sbjct: 316 QDVVARLGADEFAVALFGIDKDS-PAYVAQKLLALFDDPFFIDGHELRVGASIGVSLYPE 374 Query: 649 DGTDGETLIKHADIAMYRGKQTGRNN---FQFYTPAMNEQALERLRIEGDLRNALDHGEF 705 + TD ETL++ ADIAMYR KQ G NN + Y+ MN L+ LRIE L +A ++ E Sbjct: 375 NATDTETLLRLADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIETGLLHAFEYNEL 434 Query: 706 LLHYQPKVDLASGRVVGSEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACT 765 LL+YQPKVD+ + + G+EAL+RW HP+ G++ P FI +AEETGLI+ + WVL C Sbjct: 435 LLYYQPKVDMQTLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCR 494 Query: 766 QCRQWQLAGHEDISVSVNLSVGQFLQKDLVSSIADVLQDTGLPPASLEIELTESLMMTDV 825 Q R W+ AG I +++N++ +F + L + L+ L LE+E+TES++M Sbjct: 495 QARAWKDAGLPPIRIALNVTAREF-TRSLPDRVGAALERHMLSGEWLELEITESMLMHST 553 Query: 826 EHAIGILAGLKKLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAIT 885 + I I+ + LGI +S+DDFGTGYSSL+YLKRFPI+ LKIDRSF I D +D AI Sbjct: 554 DRVISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIA 613 Query: 886 ASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAAEKFEQILREER 943 ++II +A+ L+ +VIAEGVE ++Q ++LR GC+E+QGY+FS PV A F +L E R Sbjct: 614 SAIIGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPAPDFHAMLLEGR 671 >gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1106 Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/436 (44%), Positives = 287/436 (65%), Gaps = 6/436 (1%) Query: 507 KRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGTAERQKQALWVVFVDLDRFKFVNDTL 566 +R + + A D LTGL NR + H+ AI AE + + V+ +DLDRFK +NDT Sbjct: 660 RRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGMVAVILMDLDRFKNINDTF 719 Query: 567 GHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELSLDTRSLQRIMDAVAA 626 GH+ G+ +L+ +A R R ++RE D +AR+GGDEFI+++ + D+ Q+++ Sbjct: 720 GHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTEARK 779 Query: 627 PVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQA 686 P + G ++ SIG+A YP DG + +TLIK+ADIAMYR K G+++++F++ +N Sbjct: 780 PFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEINTNT 839 Query: 687 LERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGSEALIRWLHPQLGMVSPARFIGLA 746 +ER+ +E +LR A++ EF++HYQPK++LA GR+VG+EAL+RW HP G++ P FI LA Sbjct: 840 VERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFITLA 899 Query: 747 EETGLILPIGAWVLRTACTQC---RQWQLAGHEDISVSVNLSVGQFLQKDLVSSIADVLQ 803 EET LI IG VL AC RQ Q+ +S+NL+ QF + L+ I +V+ Sbjct: 900 EETRLIDQIGLLVLDVACRDIGLMRQQQMTCGR---ISINLTGSQFGDERLLDDIKEVVD 956 Query: 804 DTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGTGYSSLAYLKRFPID 863 G PP+ LE E+TES++M + E AI I+ G++ G +SIDDFGTGYSSLAYLKRFP++ Sbjct: 957 RHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPVN 1016 Query: 864 VLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQG 923 LKID+SF+ DI + + +AI +II+++ L L+V+ EGVET++QL LR +G DE QG Sbjct: 1017 TLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQG 1076 Query: 924 YLFSPPVAAEKFEQIL 939 Y FS PV +F Q+L Sbjct: 1077 YYFSKPVPYAQFVQLL 1092 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,933,145 Number of extensions: 127371 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 448 Number of HSP's successfully gapped: 48 Length of query: 946 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 852 Effective length of database: 1,174,780 Effective search space: 1000912560 Effective search space used: 1000912560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)