BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0037.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser...   628   0.0  

>gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 625

 Score =  628 bits (1620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/435 (77%), Positives = 363/435 (83%), Gaps = 1/435 (0%)

Query: 1   MRQVGFHGEARDGALALRYAPAWARPATHVAASDTPLRRDLPHARQALVIGAGLAGTAAA 60
           +RQVGF G++R+GAL LRYAP WARP +HVA  +TPL R     R A+VIGAGLAGTAAA
Sbjct: 191 LRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAIVIGAGLAGTAAA 250

Query: 61  ERLTARGWCVDLIDAGPEVATRASGNHGGLFMPALARDDSPLARLTRAAFLFASQRLDDL 120
           ERL+ARGW +DLIDAGPE ATRASGNH GLFMPALARDDSPLARLTRAAFLFA+QR   L
Sbjct: 251 ERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRAAFLFAAQRWQAL 310

Query: 121 GGVGLEDHAAIRGERCGILQFGRDAKQAISFEQGAQEWQYPPRYARWMSPGETASALGMP 180
           GGVG+E+ AAI GE CGILQFGRDAKQA SFEQGA+EW YP RYARWMS  ETA ALGMP
Sbjct: 311 GGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWMSAQETADALGMP 370

Query: 181 TMGGGYFFPEAGWLNPPSVCRRMLAVAQSQGEVRTHFNRAVARLVRVDGQWQALDAAGLL 240
           TMGGGYFFPEAGWLNPPSVCRRMLAVA+    V +HF   V RL R  GQWQALD AG  
Sbjct: 371 TMGGGYFFPEAGWLNPPSVCRRMLAVARQSNLVHSHFGCTVHRLQREGGQWQALDQAGES 430

Query: 241 IAQAPVVILAAGAQARVLEQAAGLPLNAVRGQVTHLPATGFPDLPHALCGDGYLTRPYAG 300
           IAQAPVVILAAGAQA  L  AA LPLNAVRGQVTHLPA GFP LP ALCGDGYLTR + G
Sbjct: 431 IAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCGDGYLTRAHGG 490

Query: 301 QVCMGASYDRFDDPALRADSHAENLARLQHMLPQIAAHMSLPQADA-DLPGRVGQRCIAP 359
            VCMGA+YDRF DPALR DSHAENL RLQHMLPQIA H  LP A A  L GRVGQRCIAP
Sbjct: 491 LVCMGATYDRFQDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQGRVGQRCIAP 550

Query: 360 DRLPLVGALPGEAGIYGLLGYASRGLIWAPLMAELLAAMIEREPLPLPRELVAALDPARF 419
           DRLPLVGALPG+AG+YGLLGYASRGLIWAPLMAELLAAM+EREPLPLPR+LVAALDPARF
Sbjct: 551 DRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLPRDLVAALDPARF 610

Query: 420 GADSAIGLNAPSDPE 434
           G  +A  L  P++ E
Sbjct: 611 GTTAASDLELPAELE 625


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,666,734
Number of extensions: 81543
Number of successful extensions: 346
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)