BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0035.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761...   222   1e-59
gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirill...   100   6e-23

>gi|300314038|ref|YP_003778130.1| hypothetical protein Hsero_4761
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  222 bits (565), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 112/131 (85%)

Query: 3   VFFEHKVASELGSFAQTLPQAGKQLWTHVEHGRCLASIVIDGDLEHRQAHLRWFIVDDSL 62
           V+FEHKVASELG+F Q+LP  GK +WTH EHGR LASIVIDGD+    AHLRWFIVDDSL
Sbjct: 196 VYFEHKVASELGAFVQSLPAPGKAIWTHQEHGRTLASIVIDGDVASGLAHLRWFIVDDSL 255

Query: 63  RGSGVGRRLLEQAMAFVDAHRLACYLWTFQGLDAARHLYLSAGFELVEESPGEQWGSRVV 122
           RG GVGRRLLEQAMA VDAH   CYLWTFQGLDAARHLYL AGF L EESPGEQWGSRVV
Sbjct: 256 RGRGVGRRLLEQAMALVDAHHFDCYLWTFQGLDAARHLYLEAGFALAEESPGEQWGSRVV 315

Query: 123 EQRYERPARRK 133
           EQRY RPAR++
Sbjct: 316 EQRYVRPARKR 326


>gi|300311184|ref|YP_003775276.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 163

 Score =  100 bits (248), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 72/127 (56%), Gaps = 2/127 (1%)

Query: 3   VFFEHKVASELGSFAQTLPQAGKQLWTHVEHGRCLASIVIDGDLEHRQ-AHLRWFIVDDS 61
           V+FE ++A+EL +F      A    WT   HGR   ++ IDG     Q A LRWFI  + 
Sbjct: 34  VYFEARIATELAAFMSRYDDARDGFWTATVHGRIEGALTIDGQHAQEQGAWLRWFIASEK 93

Query: 62  LRGSGVGRRLLEQAMAFVDAHRLAC-YLWTFQGLDAARHLYLSAGFELVEESPGEQWGSR 120
           LRG GVG  LL +A+       +A  YLWTF+GL AAR LY   GF  VEE  G  WG +
Sbjct: 94  LRGRGVGDALLSEAVRCCAERDIASIYLWTFEGLHAARTLYERHGFVRVEERIGSHWGVK 153

Query: 121 VVEQRYE 127
           + EQRYE
Sbjct: 154 LKEQRYE 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 450,081
Number of extensions: 17575
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)