BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0030.p
         (68 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314034|ref|YP_003778126.1| hypothetical protein Hsero_4757...   138   7e-35

>gi|300314034|ref|YP_003778126.1| hypothetical protein Hsero_4757
          [Herbaspirillum seropedicae SmR1]
          Length = 68

 Score =  138 bits (348), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/68 (98%), Positives = 67/68 (98%)

Query: 1  MLTLTELEDAINYWRHQRPASGEECALSPEVNALAGLYAMMIFHRRHEVDLEQIDAQARQ 60
          MLTLTELEDAINYWR QRPASGEECALSPEVNALAGLYAMMIFHRRHEVDLEQIDAQARQ
Sbjct: 1  MLTLTELEDAINYWRQQRPASGEECALSPEVNALAGLYAMMIFHRRHEVDLEQIDAQARQ 60

Query: 61 LIEAWLAS 68
          LIEAWLAS
Sbjct: 61 LIEAWLAS 68


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 223,118
Number of extensions: 6895
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 68
Length of database: 1,619,870
Length adjustment: 40
Effective length of query: 28
Effective length of database: 1,430,470
Effective search space: 40053160
Effective search space used: 40053160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)