BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0023.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751...   369   e-103

>gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/216 (87%), Positives = 204/216 (94%)

Query: 1   VRDKPKTHVSTEAARRRQHQAHAASQSLDEDELRVQQMVALASAVAADAPDRAGRRVGQD 60
           VRDKPKTHV+T+A+RRRQH AHAAS S+DEDELRVQQMVALA+AVAA A DR GRRVGQD
Sbjct: 40  VRDKPKTHVATDASRRRQHNAHAASASMDEDELRVQQMVALATAVAASAVDRQGRRVGQD 99

Query: 61  ELERMVRNTLRERDDDTLYEALEQLRYDDPRGHAFLREVVEEGADIIVLRRGEKELEINA 120
           ELERMVR+ LR+RDDDTLYEALEQLRYDD RGH FLREVVEE ADI+VLRRGEKE+EINA
Sbjct: 100 ELERMVRHALRQRDDDTLYEALEQLRYDDVRGHGFLREVVEESADIVVLRRGEKEMEINA 159

Query: 121 FLIPLLVRTRGGLREEQALADGDAFDTLRESIQKAGLESPKARVVLVHHLYHPEEINALS 180
           FLIP+LVRTRGGLREEQALADG+AFD LRES+Q+AGLESPKARVVLVHHLYHPEEINALS
Sbjct: 160 FLIPMLVRTRGGLREEQALADGEAFDALRESLQQAGLESPKARVVLVHHLYHPEEINALS 219

Query: 181 FSEVEAMNRDAFASLTDKKILSVPAIERSMRGWPAV 216
           F EVEAMNRDAFASLTDKK++SVPAIERSMRGWPA 
Sbjct: 220 FGEVEAMNRDAFASLTDKKVMSVPAIERSMRGWPAT 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 632,730
Number of extensions: 24301
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)