BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0022.p
         (172 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751...   230   4e-62

>gi|300314028|ref|YP_003778120.1| hypothetical protein Hsero_4751
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  230 bits (587), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 136/171 (79%)

Query: 1   VTDPFYAIPQEEAAADAYFESRAQRFRQWSEEITPLMQQCLTGQTGEAAQCQLHFLYQDL 60
           + DPFYA+P +EAAADAYFE RA+RFRQWS++ITPLMQQCLTG+TG  AQCQLHFLYQDL
Sbjct: 277 LDDPFYAVPADEAAADAYFEQRAERFRQWSQQITPLMQQCLTGKTGAQAQCQLHFLYQDL 336

Query: 61  FHGAKHTGNGEYRTLQMLSELEAGLAQSAAQAAEASAYIALVDEDDETTLQVVLRNAQAT 120
            HGAK TGN EYRTLQMLSELE GLA + A+ A+A+A +AL +E DE  L VVLR     
Sbjct: 337 LHGAKRTGNAEYRTLQMLSELEQGLAAAGAEPAQATAVVALEEEGDEMRLLVVLRGTAGM 396

Query: 121 LARSEHLVEGDLQAVLFDAADAVASLGVTAVRLADGFDENGQPLRARDLPA 171
           LARSE  +E D Q  L++AADA+ASLGV  VRLADGFD +GQ LR RD PA
Sbjct: 397 LARSELRLEDDGQDALWEAADALASLGVAGVRLADGFDASGQALRERDFPA 447


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 477,947
Number of extensions: 15935
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,245,805
Effective search space: 115859865
Effective search space used: 115859865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)