BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0013.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 275 2e-75 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 256 2e-69 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 246 2e-66 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 239 1e-64 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 235 2e-63 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 275 bits (704), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/246 (56%), Positives = 180/246 (73%), Gaps = 8/246 (3%) Query: 9 MIQISNLKKAFGEHVVLKDISIAVPRGSVVAMIGPSGSGKSTLLRCLNLLTVPDLGTVRI 68 MI++ + K FG H VLKD+S++V +G VV +IGPSGSGKST+LRC+N L + G + I Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 69 GERHFEFNGRKSRLPKDRELAAFRARTGMVFQHFNLFPHMTAVENVMEGMVTVLRTPKAE 128 + + +G P ++ R R GMVFQ FNLFPH T +ENV EG + V +A+ Sbjct: 61 DGQRVDRDG-----P---DIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQ 112 Query: 129 ARAKAMALLQKVGLSDRADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 AR++AM+LL KVGL+ R D YP +LSGGQ+QR+AIAR+LAMQP+ +LFDE TSALDPELV Sbjct: 113 ARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDNPREAAT 248 GEVL V+R LAADGMTMI+VTHE+ FAREVAD+V F+ G +VE+G +QV+ P+ A T Sbjct: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHART 232 Query: 249 QAFLAR 254 Q FL R Sbjct: 233 QDFLRR 238 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 256 bits (653), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/247 (55%), Positives = 176/247 (71%), Gaps = 3/247 (1%) Query: 6 SDAMIQISNLKKAFGEHVVLKDISIAVPRGSVVAMIGPSGSGKSTLLRCLNLLTVPDLGT 65 ++ ++++S L+K+FG HVVLKD+ ++V VV +IGPSGSGKST LRCLN L + GT Sbjct: 2 TEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGT 61 Query: 66 VRIGERHFEFNGRKSRLPKDRELAAFRARTGMVFQHFNLFPHMTAVENVMEGMVTVLRTP 125 V++ R GR + + L RA GMVFQ FNLFPH+T ++N+ + Sbjct: 62 VKVCGRPVVEGGR---MMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMS 118 Query: 126 KAEARAKAMALLQKVGLSDRADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDP 185 + A+ +A+ LL+KVGL+ +A YP LSGGQKQR+AIARALAM+P VMLFDE TSALDP Sbjct: 119 RKAAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDP 178 Query: 186 ELVGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDNPRE 245 ELVGEVL VIR LAA+GMTMI+VTHE+ FAREVAD VV M G +VEAGPP + P++ Sbjct: 179 ELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQ 238 Query: 246 AATQAFL 252 A T++FL Sbjct: 239 ARTRSFL 245 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 246 bits (627), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 129/246 (52%), Positives = 168/246 (68%), Gaps = 8/246 (3%) Query: 9 MIQISNLKKAFGEHVVLKDISIAVPRGSVVAMIGPSGSGKSTLLRCLNLLTVPDLGTVRI 68 MI+++ L+K FG+ +L+ I + VV +IGPSGSGKST LRCLN G + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLN-------GLEEV 53 Query: 69 GERHFEFNGRKSRLPKDRELAAFRARTGMVFQHFNLFPHMTAVENVMEGMVTVLRTPKAE 128 + G K PK L A RA GMVFQ FNLFPHMT +EN++ + V + + E Sbjct: 54 SDGDIFIEGVKLNDPK-VNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRRE 112 Query: 129 ARAKAMALLQKVGLSDRADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 A A LLQKVGL D+ D +P +LSGGQ+QR+AIARALAM+P VMLFDE TSALDPELV Sbjct: 113 AVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDNPREAAT 248 GEVL V++ LA +GMTM++VTHE+ FAREV+D+V+F+ GV++E GPP QV+ +P T Sbjct: 173 GEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERT 232 Query: 249 QAFLAR 254 + FL + Sbjct: 233 RDFLRK 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 239 bits (611), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/246 (48%), Positives = 164/246 (66%), Gaps = 7/246 (2%) Query: 8 AMIQISNLKKAFGEHVVLKDISIAVPRGSVVAMIGPSGSGKSTLLRCLNLLTVPDLGTVR 67 A+++I +L K+FG + VL +S+ V +G +VA+IG SGSGKSTLLRCLN L D G ++ Sbjct: 3 AIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQ 62 Query: 68 IGERHFEFNGRKSRLPKDRELAAFRARTGMVFQHFNLFPHMTAVENVMEGMVTVLRTPKA 127 + G P L R + G+VFQ +NLFPH+T N+ + T+ + Sbjct: 63 VC-------GHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTE 115 Query: 128 EARAKAMALLQKVGLSDRADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPEL 187 +A+ A +LQ VGL ++ D YP++LSGGQ QR+AIAR+LAM P++MLFDE TSALDPEL Sbjct: 116 QAKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPEL 175 Query: 188 VGEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDNPREAA 247 EVL V+ LA GMTM+LVTHE+AFAR++AD +VFM G V E GPP ++ +P+ A Sbjct: 176 TAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAE 235 Query: 248 TQAFLA 253 Q F++ Sbjct: 236 LQKFVS 241 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 235 bits (600), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 158/245 (64%), Gaps = 8/245 (3%) Query: 9 MIQISNLKKAFGEHVVLKDISIAVPRGSVVAMIGPSGSGKSTLLRCLNLLTVPDLGTVRI 68 +++I+N+ K FG + VL IS++V RG VVA+IG SGSGKST+LRC+N L D G++ + Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 69 GERHFEFNGRKSRLPKDRELAAFRARTGMVFQHFNLFPHMTAVENVMEGMVTVLRTPKAE 128 K L R GMVFQH+NLFPH+T EN+M V +T Sbjct: 63 AGHKLTH--------KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATET 114 Query: 129 ARAKAMALLQKVGLSDRADMYPQKLSGGQKQRIAIARALAMQPDVMLFDEATSALDPELV 188 AR A+ +L++VGL + D YP++LSGGQ+QR+AIAR+LAM+P VMLFDE TSALDPEL Sbjct: 115 ARETAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELT 174 Query: 189 GEVLNVIRGLAADGMTMILVTHEIAFAREVADQVVFMRDGVVVEAGPPSQVIDNPREAAT 248 EVL V+ LA GMTM+LVTHE+ FAR VAD VFM G V EA P + +P+ Sbjct: 175 AEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEA 234 Query: 249 QAFLA 253 + F+ Sbjct: 235 RQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 748,445 Number of extensions: 29494 Number of successful extensions: 564 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 316 Number of HSP's successfully gapped: 145 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)