BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0012.p (221 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 133 1e-32 gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 130 9e-32 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 128 3e-31 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 123 1e-29 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 121 4e-29 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/196 (40%), Positives = 118/196 (60%) Query: 23 TLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEVFRCTPVLVQLVWFYYALPVL 82 T+ T A + G LVGL+ GL R N + G +VE R TP++VQ+++ Y+ALPVL Sbjct: 22 TVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVEFVRGTPIVVQVMFIYFALPVL 81 Query: 83 LGIEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQSEAGWALGMTRFQLMKRVILPQ 142 LGI + TAA+ S+ + GA+ +EI+RG +S+ G EAG ALG+ ++++ VI P Sbjct: 82 LGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGLREAGLALGLPVWRVLAFVIGPV 141 Query: 143 AFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEIYTLVAIIYFLIL 202 A +RM P + NQ I+ LK+TSL V+ V +L QGQ I +R +EI+ VA IY ++ Sbjct: 142 AIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEIMAANFRAVEIWIAVAAIYLCMI 201 Query: 203 LPATIWAKRLENRLSV 218 T + E R+ + Sbjct: 202 GVMTYALRTFEKRMRI 217 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 130 bits (327), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 73/209 (34%), Positives = 128/209 (61%), Gaps = 9/209 (4%) Query: 19 GFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEVFRCTPVLVQLVWFYYA 78 G +TL T + +A G+++G ++ + RLSSN +S +V + R P+++ + WFY+ Sbjct: 21 GLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYFL 80 Query: 79 LPV----LLG----IEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQSEAGWALGMT 130 +P ++G I++ A +A+++ L+ A+Y EI+R GI SI GQ AG+A+GM Sbjct: 81 VPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMN 140 Query: 131 RFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVL-AVPDLLYQGQIIAHETYRPLE 189 +Q+M V+LPQAF+ MTP L+ Q+I+ ++ SL+ VL +VPD + IA R +E Sbjct: 141 YWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVE 200 Query: 190 IYTLVAIIYFLILLPATIWAKRLENRLSV 218 +Y VA++YF++ + KR + ++++ Sbjct: 201 MYLFVAVVYFVLSFGLSTLVKRFQKKIAI 229 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 1/200 (0%) Query: 21 VYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEVFRCTPVLVQLVWFYYALP 80 V+T+ ++ G + G V+ L R+S N + G +++V + P+LV L Y+ L Sbjct: 17 VWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLA 76 Query: 81 VLLGIEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQSEAGWALGMTRFQLMKRVIL 140 + G +++ AA +S A+Y AF EI RG I ++ Q EA LG RF+ + +VIL Sbjct: 77 IA-GFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVIL 135 Query: 141 PQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEIYTLVAIIYFL 200 PQA K TPP V + +KNTSL SV+ DL GQII + T++P ++ VA+IYF Sbjct: 136 PQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFC 195 Query: 201 ILLPATIWAKRLENRLSVQH 220 + P + +K E +L+V H Sbjct: 196 LCFPLSALSKHFERKLNVSH 215 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 27/220 (12%) Query: 23 TLSYTVACIALGLLVGLVVGLGRLSSNPF----------ISGPLRAFVEVFRCTPVLVQL 72 TL + C+ G GLV+G+GRL+ + P+R +V R TP+ VQ+ Sbjct: 24 TLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWPIRFYVSFLRGTPLFVQI 83 Query: 73 VWFYYAL-PVLL----GIEMSAGTA------------AMLSLALYGGAFYSEIIRGGIVS 115 + ++AL P+L+ G+ +S A A+L++ L GA+ SEI R GI S Sbjct: 84 LLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITLNSGAYVSEIFRAGIQS 143 Query: 116 IDVGQSEAGWALGMTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLY 175 ID GQSEA +LGM+ ++RV+LPQAF+RM PPL N +I +K++SL S + + +L Y Sbjct: 144 IDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAIVKDSSLASAIGLAELAY 203 Query: 176 QGQIIAHETYRPLEIYTLVAIIYFLILLPATIWAKRLENR 215 + ++ R E Y +++IY+LI L + + LE R Sbjct: 204 AARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEAR 243 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 1/212 (0%) Query: 9 LWQFRSIIGIGFVYTLSYTVACIALGLLVGLVVGLGRLSSNPFISGPLRAFVEVFRCTPV 68 L Q + G YTL + +A + GL++G V+ + R+ I P +V + R TP+ Sbjct: 9 LQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPL 68 Query: 69 LVQLVWFYYALPVLLGIEMSAGTAAMLSLALYGGAFYSEIIRGGIVSIDVGQSEAGWALG 128 LVQ+ YY LP + GIE S TA +L+L+L A+ SE +RG I+ + GQ A +++G Sbjct: 69 LVQIFVVYYGLPGM-GIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVG 127 Query: 129 MTRFQLMKRVILPQAFKRMTPPLVNQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPL 188 +T FQ ++ +I+PQA + P + N I +K+TSL+SV+ V +L+ + + T+RPL Sbjct: 128 LTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPL 187 Query: 189 EIYTLVAIIYFLILLPATIWAKRLENRLSVQH 220 +Y A IY+++ L RLE +L H Sbjct: 188 PLYVAAAAIYWMLSLCFEALQHRLEKKLGKAH 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.143 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 635,148 Number of extensions: 22703 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 19 Length of query: 221 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,231,600 Effective search space: 171192400 Effective search space used: 171192400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)