BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0007.p
         (225 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...   381   e-107
gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...    81   6e-17

>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/225 (91%), Positives = 211/225 (93%), Gaps = 4/225 (1%)

Query: 1   MTFQYRLAGACALAVSLSVSLSACNSPAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQL 60
           M  Q RLAGAC LA  LS    ACNSPAPMV GPTSVRPAYQVANVENNGAIFRVSSAQL
Sbjct: 1   MLIQTRLAGACTLAALLS----ACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQL 56

Query: 61  FEEPTTYNVGDIIKIDISESISSSNKAATTNSRDTTLTQKGPGSGAPLGGLFTQLYDANY 120
           FEEPT YNVGDIIKIDISESISSSNKAAT NSRD++LTQKGPGSGAPLGGLFTQLYDANY
Sbjct: 57  FEEPTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANY 116

Query: 121 SANGSNTFKGSGDSSNTNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNTNTLRFSGVV 180
           SA+G+NTFKGSGDSSNTNTM+GTLMVSIVEVLPNRNLVVAGEKRIGVNGN NTLRFSGVV
Sbjct: 117 SASGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176

Query: 181 RTRDIRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW 225
           RTRDIRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW
Sbjct: 177 RTRDIRGGIVASSNVADARLEQVGGGSIADASTDGNFFRRLLTIW 221


>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 81.3 bits (199), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 11/187 (5%)

Query: 19  VSLSACNS-PAPMVTGPTSVRPAYQVANVENNGAIFRVSSAQ-LFEEPTTYNVGDIIKID 76
           ++++ C + P  +V GP S RP         +GAIF+ +  + L E+     VGD + I 
Sbjct: 14  LAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLEDRRARLVGDTLTIV 73

Query: 77  ISESISSSNKAATTNSRDTTLTQKGPGSGAPLGGLF-TQLYDANYSANGSNTFKGSGDSS 135
           I+E  S+   AA++ S+   +        +P+   F T + +   + + S  F   G ++
Sbjct: 74  INEKTSAGKSAASSASKTGAV-------NSPVPTFFGTSIKELTANGSSSAKFDDKGATT 126

Query: 136 NTNTMTGTLMVSIVEVLPNRNLVVAGEKRIGVNGNTNTLRFSGVVRTRDIR-GGIVASSN 194
           ++NT TGT+ V++VEVLPN NLVVAGEK++ ++     +RFSG V   +I+ G  V+S+ 
Sbjct: 127 SSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGNTVSSTL 186

Query: 195 VADARLE 201
           VADA++E
Sbjct: 187 VADAKVE 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 583,767
Number of extensions: 21770
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,231,600
Effective search space: 176118800
Effective search space used: 176118800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)