BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0002.p (414 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 746 0.0 gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 97 2e-21 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 92 1e-19 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 57 2e-09 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/413 (93%), Positives = 403/413 (97%) Query: 1 MSKQQLSERLCAWIDQHFEEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVQSWGWQAEK 60 MSK+QLS+RLCAWIDQHF+EEVGVLQQLIRIPTDTPPGNNAPHADAVAELV WGW AEK Sbjct: 1 MSKEQLSQRLCAWIDQHFDEEVGVLQQLIRIPTDTPPGNNAPHADAVAELVAGWGWAAEK 60 Query: 61 HAVPADQVRDYGMQSITNLIVRRPYGDGGPTLALNAHGDVVPPGEGWTHDPYGGEVADGR 120 H VPA QV DYGMQSITNLIVRRPYGDGGPTLALNAHGDVVPPGEGWTHDPYGGE+ADGR Sbjct: 61 HVVPAQQVADYGMQSITNLIVRRPYGDGGPTLALNAHGDVVPPGEGWTHDPYGGEIADGR 120 Query: 121 IYGRAAAVSKSDFASYIFATRALESLGAALRGAVELHFTYDEEFGGVLGPGWLLEQKLTR 180 IYGRAAAVSKSDFASY+FATRALE++GA+LRG VELHFTYDEEFGG+LGPGWLLEQKLTR Sbjct: 121 IYGRAAAVSKSDFASYLFATRALEAVGASLRGGVELHFTYDEEFGGLLGPGWLLEQKLTR 180 Query: 181 PDYVLAAGFSYNVVTAHNACLQFEVTVHGRATHGSMPETGHDALQAANAILNAIYGALPG 240 PDYVLAAGFSYNVVTAHNACLQFE+TVHGRATHGSMPETGHDALQAA AILNAIYGALPG Sbjct: 181 PDYVLAAGFSYNVVTAHNACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPG 240 Query: 241 LKDIRSSIPGISHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPAQVEAGVRKLIE 300 LK+IRS+IPGI+HPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDP+QVEAGVRKLIE Sbjct: 241 LKEIRSAIPGITHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIE 300 Query: 301 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLVDSLLRNAEQVMGETLTTNGSALYTDARL 360 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLV+SLLRNA +VMGETLTTNGSALYTDARL Sbjct: 301 DAVAGLPGIRVEIRRLLLARALRPLPGHEKLVESLLRNAREVMGETLTTNGSALYTDARL 360 Query: 361 YGEAGIPVVLFGAGPRTLMESNAKQADENLALDDLKKATKVVALMLLDFLGPQ 413 YGE GIPVVLFGAGPRTLMESNAKQADENLALDDL+KATKVVALMLLDFLGPQ Sbjct: 361 YGEQGIPVVLFGAGPRTLMESNAKQADENLALDDLRKATKVVALMLLDFLGPQ 413 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 150/331 (45%), Gaps = 30/331 (9%) Query: 86 GDGGPT---LALNAHGDVVP-PGEGWTHDPYGGEVADGRIYGRAAAVSKSDFASYIFATR 141 GD GP + H DVVP G+ W DP+ VADG+++GR A K A + Sbjct: 70 GDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGFIAICMARLP 129 Query: 142 ALESLGAALRGAVELHFTYDEEFGGVLGPGWL---LEQKLTRPD-YVLAAGFSYNVVTAH 197 A++ A L + F+YDEE G LG L L+Q RP ++ V AH Sbjct: 130 AIDL--ARLHTPLHFSFSYDEEV-GCLGVRELLADLQQNDIRPTGVIIGEPTMMQPVIAH 186 Query: 198 NACLQFEVTVHGRATHGSMPETGHDALQAANAILN------AIYGALPGLKDIRSSIPGI 251 + +VHG A H S P G +++ A A++ A+ G++D +P Sbjct: 187 KGKRSYRCSVHGHAAHSSCPHLGINSIDFA-AMMQLKIREIALRVRHSGVQDDDFDVPYS 245 Query: 252 SHPTMIVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPAQVEAGVRKLIEDAVAGLPGIRV 311 S T + GG N++P K + R +P DPA+V V+ E + LP +R+ Sbjct: 246 SIATTLT---SGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEI--LPQMRI 300 Query: 312 E-IRRLLLARALRPLPGHEKLVDS-LLRNAEQVMGETLTTNGSALYTDARLYGEAGIPVV 369 + ++ + L PG D L+ +A +++G T+ L+G+AG+P V Sbjct: 301 DGVQGRIEFETLTSYPGMCTPADDPLVTSALRILGSE-RARKVGFGTEGGLFGQAGMPAV 359 Query: 370 LFGAGPRTLMESNAKQADENLALDDLKKATK 400 + G G ++A + +E + L+ L + + Sbjct: 360 ICGPGDI----AHAHKPNEFVTLEQLARCER 386 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 128/300 (42%), Gaps = 31/300 (10%) Query: 92 LALNAHGDVVP-PGEGWTHDPYGGEVADGRIYGRAAAVSKSDFASYIFATRAL--ESLGA 148 + L+ H DVVP G+ W DP+ DG +Y R + D +I AL E L Sbjct: 76 IVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSC----DMKGFIATALALVPEYLAM 131 Query: 149 ALRGAVELHFTYDEEFGGVLGPGWLLEQKLTR----PDYVLAAGFSYNVVTAHNACLQFE 204 + L F++DEE G + P +LE+ + R V+ S NVV AH F Sbjct: 132 PRVKPIHLAFSFDEEIGCIGAP-VMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGINVFA 190 Query: 205 VTVHGRATHGSMPETGHDALQAANAILNAIYGALPGLK-----DIRSSIPGISHPTMIVG 259 VHG++ H S+ G +A++ A ++ AI G K D +P TM Sbjct: 191 CKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP---FSTMTTN 247 Query: 260 RIDGGTNTNVVPGKVVLKMDRRMIPEEDPAQVEAGVRKLIEDAV-----AGLPGIRVEIR 314 +I GG N +P + R +P A ++A + K I + + P RVEI Sbjct: 248 QIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVEID 307 Query: 315 RLLLARALRPLPGHEKLVDSLLRNAEQVMGETLTTNGSALYTDARLYGEAGIPVVLFGAG 374 + AL + + + L+R + T A T+A L+ + GIP ++ G G Sbjct: 308 NFAGSPALEAV--EQAAITELVR----ALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPG 361 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 29/224 (12%) Query: 76 ITNLIVRRPYGDGGPTLALNAHGDVVPPG--EGWTHDPYGGEVADGRIYGRAAAVSKSDF 133 +TNL R+ G P + H DVVP G E W P+ + +GR+YGR A+ K+ Sbjct: 49 VTNLWARK--GTAQPLVVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSI 106 Query: 134 ASYIFATRALESLGAALRGAVELHFTYDEE---FGGVLGPGWLLEQKLTRPDYVL----- 185 A+ + A + +G++ T DEE G + L+ + + DY + Sbjct: 107 AAMVVACEEFTAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPT 166 Query: 186 -AAGFSYNVVTAHNACLQFEVTVHGRATHGSMPETGHDALQAANAILNAIYGALPGLKDI 244 A + + ++TV G H + P+ N I+ A P L ++ Sbjct: 167 SAKTLGDMIKNGRRGTMSGKLTVKGIQGHIAYPQLAR----------NPIHQAAPALAEL 216 Query: 245 RSSIPGISHPTMI-----VGRIDGGTN-TNVVPGKVVLKMDRRM 282 + + + + I GGT +NV+PG+V++ + R Sbjct: 217 VAEQWDAGNEYYLPTSWQISNIHGGTGASNVIPGEVMIDFNFRF 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,388,403 Number of extensions: 60797 Number of successful extensions: 203 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 4 Length of query: 414 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 326 Effective length of database: 1,203,190 Effective search space: 392239940 Effective search space used: 392239940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)