BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0030.p
         (539 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309915|ref|YP_003774007.1| alkaline phosphatase D [Herbasp...  1025   0.0  

>gi|300309915|ref|YP_003774007.1| alkaline phosphatase D
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/542 (93%), Positives = 523/542 (96%), Gaps = 3/542 (0%)

Query: 1   MPDRNPPADHSRRRFLRDSAVTTIAATTTLAAPAAFS---AAPAIVTSERLRPQFPGGTM 57
           MPD+NPPADHSRRRFLRDSAVTT+     LA+PAA S   AAPAIVTSERLRPQ PGG M
Sbjct: 1   MPDQNPPADHSRRRFLRDSAVTTVTTAAALASPAALSATPAAPAIVTSERLRPQLPGGVM 60

Query: 58  SGDVTRDSAMIWARADRNARMLVEYSTREDFSNPVRIAGPTALAREDYTARVDLRGLPGG 117
           SGDVTRDSA++WARADRNARMLVEYST  +FSNPVRIAGPTALAREDYTARVDLR LP G
Sbjct: 61  SGDVTRDSAILWARADRNARMLVEYSTSGNFSNPVRIAGPTALAREDYTARVDLRDLPAG 120

Query: 118 QRVYYRVRFQDLVHESALSEPLTGSLMLPATTPAQARDITFAFSGDEAGQGWGINEQWGG 177
           QR+YYRVRFQDLVHESALSEPLTGSLM+PA+   QARDITFAFSGDEAGQGWGINEQWGG
Sbjct: 121 QRLYYRVRFQDLVHESALSEPLTGSLMMPASAHGQARDITFAFSGDEAGQGWGINEQWGG 180

Query: 178 YRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLEDGTLWRNVVTEAKSKVAQTLDDYRG 237
           YRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKL+DG+LWRNVVTEAKSKVAQTLDDYRG
Sbjct: 181 YRVYESMRRFRPDFFIHSGDQIYADGPIQAEVKLDDGSLWRNVVTEAKSKVAQTLDDYRG 240

Query: 238 NFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPGQVIGAAEKRYDERNIDVLAARARQ 297
           NFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPGQ IGAAEKRYDERNIDVLAARARQ
Sbjct: 241 NFAYNMLDANKRRFAAEVPFLVQWDDHEVRNNWYPGQEIGAAEKRYDERNIDVLAARARQ 300

Query: 298 AMFEHNPFRIDSADPFRIYRAFNHGPLLDVFMLDERSYRGRNSPNRQKGGHDADFLGPEQ 357
           AMFEHNPFRIDSADPFRIYR+FNHGPLL+VFMLDERSYRGRNSPNRQKGGHDADFLGPEQ
Sbjct: 301 AMFEHNPFRIDSADPFRIYRSFNHGPLLEVFMLDERSYRGRNSPNRQKGGHDADFLGPEQ 360

Query: 358 MRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPQGTFEAWANADNGKPSGRELEVAE 417
           MRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVP+GTFEAWANADNGKPSGRELEVAE
Sbjct: 361 MRWIKQALLRSRSTWKLIASDMPLSIVVPDLNPDVPKGTFEAWANADNGKPSGRELEVAE 420

Query: 418 LLRFIKQHDIKNVVWVTADVHYASATHYAPERAQFTDFKPFWEFVGGPINAGTFGPGEID 477
           LLRFIKQHDIKNVVWVTADVHYASATHYAPERAQFTDFKPFWEFVGGPINAGTFGPGEID
Sbjct: 421 LLRFIKQHDIKNVVWVTADVHYASATHYAPERAQFTDFKPFWEFVGGPINAGTFGPGEID 480

Query: 478 RTFGPDVRFVSIPADMKQNRSPAELLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELPP 537
           RTFGPDVRFVSIPADMKQNRSPAELLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELPP
Sbjct: 481 RTFGPDVRFVSIPADMKQNRSPAELLQFFGIGKIDAKSKTLTVTLHNTDGKEIYKVELPP 540

Query: 538 EA 539
           EA
Sbjct: 541 EA 542


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,801,929
Number of extensions: 78758
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,193,720
Effective search space: 535980280
Effective search space used: 535980280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)