BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0021.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587...   401   e-113

>gi|300309922|ref|YP_003774014.1| hypothetical protein Hsero_0587
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  401 bits (1030), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 211/231 (91%), Gaps = 8/231 (3%)

Query: 1   MSTVSTLSSTVDSLPLPSLFVSHGSPMLAVEPGRTGPLLASIGATLPRPRGIVMVSPHWE 60
           MST++      DSLPLPSLFVSHGSPMLAVEPGRTGPLLA IGATLPRPRGIV+VSPHWE
Sbjct: 1   MSTIA-----ADSLPLPSLFVSHGSPMLAVEPGRTGPLLAGIGATLPRPRGIVVVSPHWE 55

Query: 61  TFTPRVGNQAKPRVIHDFGGFPQELYELDYPAPGAPALAEHVAQRLRDGGLPANTDGGWG 120
           TFTPRVGNQAKPRVIHDFGGFP  LYELDYPAPGAPALAEHVAQRLRDGGLPA+TDGGWG
Sbjct: 56  TFTPRVGNQAKPRVIHDFGGFPPALYELDYPAPGAPALAEHVAQRLRDGGLPAHTDGGWG 115

Query: 121 LDHGAWVPLRYLYPQADVPVIQLSLQSQQPPEYHYQVGRLLAPLAKEGILLVGSGSFTHN 180
           LDHGAWVPLRYLYPQADVPVIQLSLQSQQPP YH+QVG+LLAPLAKEGILLVGSGSFTHN
Sbjct: 116 LDHGAWVPLRYLYPQADVPVIQLSLQSQQPPAYHFQVGQLLAPLAKEGILLVGSGSFTHN 175

Query: 181 LRELRRNEIEGGDAPHTLEFLRWFLDRMQAGDLQALFGYRTKGFXPPHRMR 231
           LRELRRN+ + GDAPHTL+FL+WFLDRMQAGD  ALFGYRT     PH +R
Sbjct: 176 LRELRRNDADSGDAPHTLQFLQWFLDRMQAGDRDALFGYRTTA---PHAVR 223


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 871,638
Number of extensions: 42426
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)