BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0020.p
         (137 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309923|ref|YP_003774015.1| membrane protein [Herbaspirillu...   229   6e-62

>gi|300309923|ref|YP_003774015.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 138

 Score =  229 bits (584), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 130/137 (94%), Positives = 135/137 (98%)

Query: 1   MTTVTVNTRADYAAFLLRVTMGIFFLVHAGLKLFVFTPAGTVGFFASLGVPGWFAYPVMA 60
           M+TVTVNTRADYAAFLLRVTMG+FFLVHAGLK+FVFTPAGTVGFFASLGVPGWFAYPV+A
Sbjct: 1   MSTVTVNTRADYAAFLLRVTMGVFFLVHAGLKIFVFTPAGTVGFFASLGVPGWFAYPVIA 60

Query: 61  LEVVGGIALVLGFYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120
           LEVVGGIALVLG+YGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA
Sbjct: 61  LEVVGGIALVLGYYGRWLALPLAADLLGAIVLVHGKAGFFFTNPKGGWEYLALWIVGLIA 120

Query: 121 VFLLGDGAFALKREAQR 137
           VFLLGDGAFALKRE  R
Sbjct: 121 VFLLGDGAFALKREEPR 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.148    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 428,682
Number of extensions: 16670
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,260,010
Effective search space: 76860610
Effective search space used: 76860610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)