BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0015.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reduct...   792   0.0  

>gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/424 (96%), Positives = 415/424 (97%), Gaps = 2/424 (0%)

Query: 1   MENIDLYMNRIGQQARAASRAMPTCAYDTAAKNQALLLIAAAIRRDADVLRAANALDLDA 60
           MENIDLYMNRIGQQARAASRA      DTAAKNQALLLIAAAIRRDAD LRAANALDL+A
Sbjct: 1   MENIDLYMNRIGQQARAASRA--MARADTAAKNQALLLIAAAIRRDADALRAANALDLEA 58

Query: 61  ARANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPL 120
           ARANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPL
Sbjct: 59  ARANGLAEAMLDRLTLSDKAIATMAEGLEQIASLPDPIGEISNMKYRPTGIQVGQMRVPL 118

Query: 121 GVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEQA 180
           GVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEQA
Sbjct: 119 GVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGLAGAGLPEQA 178

Query: 181 VQVVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDK 240
           VQVVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDK
Sbjct: 179 VQVVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICHVYIDDK 238

Query: 241 ADTRKALDVAFNAKCHRYGTCNTMETLLVSRNIAAAILPPLSELYRVKEVELRCDPEAAE 300
           ADTRKALDVAFNAKCHRYGTCNTMETLLV+RNIAAAILPPLSELYRVKEVELRCD EAAE
Sbjct: 239 ADTRKALDVAFNAKCHRYGTCNTMETLLVARNIAAAILPPLSELYRVKEVELRCDAEAAE 298

Query: 301 ILAGYPLLKAATEEDWDTEYLAPILAVKVVADMDEAIEHINRHSSQHTDSIITEDYTRAM 360
           ILAGYPLLKAATEEDWDTEYLAPILAVKVVADMDEAIEHINRHSSQHT+SIITEDYTRAM
Sbjct: 299 ILAGYPLLKAATEEDWDTEYLAPILAVKVVADMDEAIEHINRHSSQHTESIITEDYTRAM 358

Query: 361 RFLREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGQG 420
           RFLREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKY+VLG G
Sbjct: 359 RFLREVDSASVMVNASTRFADGFEYGLGAEIGISNDKLHARGPVGLEGLTSLKYIVLGNG 418

Query: 421 QVRQ 424
           QVRQ
Sbjct: 419 QVRQ 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,162,457
Number of extensions: 47248
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)