BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0008.p
         (367 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...   627   0.0  
gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    75   9e-15

>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  627 bits (1617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/335 (95%), Positives = 328/335 (97%)

Query: 1   MFLKRVIQTAAGALLLSASLAASAQTAICYNCPPEWADWAAQIKAIKDKTGITVPPDNKN 60
           MFLKRVIQTAAGALLLSASLAA AQTAICYNCPPEWADWAAQIKAIK+KTG+TVPPDNKN
Sbjct: 1   MFLKRVIQTAAGALLLSASLAAQAQTAICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKN 60

Query: 61  SGQALAQLTAEKASPVADFTYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWVT 120
           SGQALAQLTAEKASPVADF YLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYW T
Sbjct: 61  SGQALAQLTAEKASPVADFAYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFT 120

Query: 121 IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQAMGG 180
           IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQA+GG
Sbjct: 121 IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQALGG 180

Query: 181 TLDDFSPAITFFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV 240
           TLDDFSPAI +FKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV
Sbjct: 181 TLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV 240

Query: 241 IPSEGTVTVPYVVSLVKNGPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRAAAMSKEAEA 300
           IPSEGTVTVPYVV+LVKN PHQAEAKKVLDFLLSDQGQAIWANAYLRPVRA+AMSKEAE+
Sbjct: 241 IPSEGTVTVPYVVALVKNAPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRASAMSKEAES 300

Query: 301 RFLPASEYARAKAVDYGKMAEAQRKFGERYLAXTR 335
           RFLPA+EYARAK+VDYGKMAEAQRKFGERYLA  R
Sbjct: 301 RFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR 335


>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 42  QIKAIKDKTGITVPPDNKNSGQALAQLTAEKASPVADFTYLGVSFGIEAKNKD-LVAAYK 100
           +IK ++D TGI             A+L AEKA+P AD  +   +  +   +K+ ++  Y 
Sbjct: 84  EIKWVRDSTGIVT-----------AKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYA 132

Query: 101 PAHWNDIPNGLKDPDG--YWVTIHSGTMGIMVN-VDALK-GKPVPKSWADLQKPEYKGLI 156
           P   + I    +       WV +      I  N V+A K G P P SWADL KP Y G I
Sbjct: 133 PQGLSAIDAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKI 192

Query: 157 GYLDPASAFVGYVGAVAINQAMGGTLDDFSPAITFFKNLQKN--QPIVPKQTSYARLISG 214
              +PAS+  GY+   A  Q MG           +   L KN  Q          +  +G
Sbjct: 193 VMPNPASSGTGYLDVSAWLQMMGE-----DKGWAYMDALHKNIGQYTHSGSKPCKQAATG 247

Query: 215 EIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVSLVKNGPHQAEAKKVLDFLLS 274
           E PI + +++ A + K K+ A +  ++PSEG        ++VK   H   AKK+ DF  S
Sbjct: 248 EFPIGIAFEYRAVKTK-KEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSAS 306

Query: 275 DQGQAIWANAY 285
            +  A++   +
Sbjct: 307 KEAMALYEKNF 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,175,177
Number of extensions: 50411
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 367
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,207,925
Effective search space: 338219000
Effective search space used: 338219000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)