BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0006.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC trans...   514   e-147
gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas...    61   9e-11
gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme...    57   1e-09

>gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  514 bits (1325), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/267 (97%), Positives = 263/267 (98%)

Query: 1   MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60
           MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT
Sbjct: 1   MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60

Query: 61  IWRSLIIALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATALALI 120
           IWRSL IALACLAVTL AGVPLAYMLARYRGG+SRLARVIEELLMMPVAVPGLATALALI
Sbjct: 61  IWRSLFIALACLAVTLAAGVPLAYMLARYRGGNSRLARVIEELLMMPVAVPGLATALALI 120

Query: 121 MAYGQLREFRASILFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180
           MAYGQ REFRAS+ FILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF
Sbjct: 121 MAYGQYREFRASLWFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180

Query: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240
           GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT
Sbjct: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240

Query: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267
           LIFFFMIIPLLIGMQWATQATRKKVSL
Sbjct: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267


>gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 54  WEMYQPTI-----WR----SLIIALACLAVTLVAGVPLAYMLARYRGGHSRLARVIEELL 104
           W++Y  +I     W     +LI A   + + LV GV  A+ +A++     R   ++  L+
Sbjct: 63  WDVYVASITEADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFE---FRGKNLLLTLI 119

Query: 105 MMPVAVPGLATALALIMAYG-------QLREFRASILF----ILVGHVIFTLPFMVRPVL 153
            +P +V  + + L  ++ +G        LRE    ILF    I++  +  T PF+ R ++
Sbjct: 120 DLPFSVSPVISGLIYVLLFGLQGYLGPWLREHDIKILFAVPGIVLATIFVTFPFVARELI 179

Query: 154 AVMQSSQLAQLEEAAASLGAGRMRRFFGIVIPNAASGILAGALMVVTLSIGEFN 207
            +MQS Q ++ EEAA  LGA   R F+ + +PN   G+L G ++    ++GEF 
Sbjct: 180 PLMQS-QGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFG 232


>gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 224

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 24/200 (12%)

Query: 61  IWRSLIIAL--ACLA--VTLVAGVPLAYMLARYRGGHSRLARVIEELLMMPVAVPGLATA 116
           +W  L+++L  A LA  + LV GV  AY L+R+R   S L   I+ +L +P+ +P     
Sbjct: 4   VWTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWR---SALRDFIDSVLTLPLVLPPTVLG 60

Query: 117 LALIMAYGQ-------LREFRASILFILVGHV----IFTLPFMVRPVLAVMQSSQLAQLE 165
             L++ +G+       L      ++F   G V    +   P +++   A  +S    Q+E
Sbjct: 61  YYLLVLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVD-HQME 119

Query: 166 EAAASLGAGRMRRFFGIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPL---TQTLPV 222
           +AA  LG      FF + +P A  GI+AG L+    ++GEF  T M+   L   TQTL V
Sbjct: 120 DAARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSV 179

Query: 223 GLADAYASMRLEVGSAYTLI 242
            + +A  +   + GSA  L+
Sbjct: 180 AIYEAVQAG--DDGSATLLV 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.141    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 739,794
Number of extensions: 28241
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 8
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 130 (54.7 bits)