BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0005.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 664 0.0 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 244 1e-65 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 238 6e-64 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 236 3e-63 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 234 6e-63 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/364 (90%), Positives = 340/364 (93%), Gaps = 3/364 (0%) Query: 1 MKPKQEAVSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLE 60 MK QEAVSIRL QCAKSFANGTRALQPLDL IHPGETLVLLGPSGCGKTTTLRMIAGLE Sbjct: 1 MKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLE 60 Query: 61 FPDEGGRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAGERAE 120 FPDEGGRV FG+EDVT LPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKI AGERAE Sbjct: 61 FPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE 120 Query: 121 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 180 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV Sbjct: 121 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 180 Query: 181 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPREIYYHPANDFVAD 240 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTP+EIYYHPANDFVA+ Sbjct: 181 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAE 240 Query: 241 FIGAMNRVQGIVSGDRLLLPTGSLPLLDKLDAAQQGQQACALFRPEDVEVVDVTEADAQC 300 FIGAMNRV GIV+GDRL LPTG+LPL A GQ A ALFRPEDVEV+D+TEADA C Sbjct: 241 FIGAMNRVDGIVAGDRLQLPTGTLPLPPD---AVAGQPAQALFRPEDVEVIDITEADAHC 297 Query: 301 VRGKLLNTFFLGDRTRFEIEIGTERPVIAETSRRGWWEAGQQIAIRVPAEALVKLAPRAE 360 +RGKL+NTFFLGDRTRFEIEIG ERPVIAETSRRGWWEAGQQIAIRVPA ALV +APRA Sbjct: 298 LRGKLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTMAPRAA 357 Query: 361 KETA 364 KETA Sbjct: 358 KETA 361 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 244 bits (622), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 131/334 (39%), Positives = 192/334 (57%), Gaps = 6/334 (1%) Query: 4 KQEAVSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPD 63 +Q V ++ K++ ++ LDLDI GE L LLGPSG GKTT L M+AG EFP Sbjct: 16 QQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFP- 74 Query: 64 EGGRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAGERAERVE 123 GG + + + +P KR +GMVFQNYALFP+M++ +N+AY + +RK+ R +V+ Sbjct: 75 TGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVK 134 Query: 124 RLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 183 + L+MV + R QLSGGQ+QRVALAR L +P+++L+DEPL ALD +LRE ++ + Sbjct: 135 QALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLE 194 Query: 184 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPREIYYHPANDFVADFIG 243 L L + LG+T +YVTHDQ EA+ + DR+ V ++G I Q+ E+Y +P N FVA+FIG Sbjct: 195 LKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIG 254 Query: 244 AMNRVQG---IVSGDRLLLPTGSLPLLDKLDA--AQQGQQACALFRPEDVEVVDVTEADA 298 NR +G V G+ + L L+ A GQ A RPE + + A+ Sbjct: 255 DNNRFKGSVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITACVRPERIRLAAGGSAEP 314 Query: 299 QCVRGKLLNTFFLGDRTRFEIEIGTERPVIAETS 332 +R + + GD R + + + S Sbjct: 315 NSIRASIAGLIYFGDHVRVRCTVAGQEDCFVKLS 348 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 238 bits (607), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 127/249 (51%), Positives = 172/249 (69%), Gaps = 10/249 (4%) Query: 8 VSIRLQQCAKSFANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 67 +SI + K F + T AL + L+ GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 1 MSIEVHHIQKRFGSFT-ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-SGQ 58 Query: 68 VFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAGERA------ER 121 V ED +A + +R VG VFQ+YALF +M+V ENIA+G++++ P +R E+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVK--PRSQRPSEAVIREK 116 Query: 122 VERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 V+RLLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 117 VKRLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPREIYYHPANDFVADF 241 L +L L +T+I+VTHDQ EA+ + D++V+M +G++ QIGTP +Y HPA+ FV F Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGF 236 Query: 242 IGAMNRVQG 250 +G +N G Sbjct: 237 LGNVNLFHG 245 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 236 bits (601), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/252 (49%), Positives = 170/252 (67%), Gaps = 6/252 (2%) Query: 9 SIRLQQCAKSFANGTRA---LQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG 65 +I L+Q K++ GT+A + +D +I GE +V++GPSGCGK+T LRM+AGLE Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLE-EISS 61 Query: 66 GRVFFGDEDVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAGERAERVERL 125 G++ GD V L ++R + MVFQNYAL+P+M+V +N+AYG+KI+ + E RV+R Sbjct: 62 GQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRA 121 Query: 126 LEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLN 185 ++ L L R QLSGGQ+QRVA+ RA+ +P V L DEPL+ LDAKLR +R ++ Sbjct: 122 AAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQ 181 Query: 186 KLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPREIYYHPANDFVADFIGA- 244 KL SL T++YVTHDQ EAM LG R++VM RG QIGTP E+Y PA FVA FIG+ Sbjct: 182 KLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSP 241 Query: 245 -MNRVQGIVSGD 255 MN +QG +S D Sbjct: 242 PMNLLQGKLSAD 253 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 234 bits (598), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 135/308 (43%), Positives = 193/308 (62%), Gaps = 17/308 (5%) Query: 20 ANGTRALQPLDLDIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGG------RVFFGDE 73 A+ L+ + +++ GE + LLGPSG GKTT LR +AGLE P G RVF G Sbjct: 17 AHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGAR 76 Query: 74 DVTALPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIPAGERAERVERLLEMVHLQG 133 + +P E+R +G+VFQ+YAL+P+ +V +N+AYG+K+RK P+GE A RV+ +L + L Sbjct: 77 NFE-MPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGH 135 Query: 134 LSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGI 193 L R QLSGGQ+QRVA+ARAL P+V+LLDEPL+ LDAKLRE R+ L +L+ LG+ Sbjct: 136 LGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGL 195 Query: 194 TAIYVTHDQGEAMALGDRIVVMERGKISQIGTPREIYYHPANDFVADFIGAMNRVQGIV- 252 +A+ VTHDQGEAMA+ DRI+++ G+I Q GTP+ +Y P F A+F+G+ N++ V Sbjct: 196 SALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVL 255 Query: 253 --SGDRLLLP----TGSLPLLDKLDAAQQGQQACALFRPEDVEVVDVTEADAQCVRGKLL 306 G+R+ + T L + D + G+Q + R E V + EA +R L Sbjct: 256 SREGERVTVKLDGGTAVATLRGRSD-VRPGEQLTGIIRVEQVRISG--EASDNAIRLPLS 312 Query: 307 NTFFLGDR 314 +LGDR Sbjct: 313 TCMYLGDR 320 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,045,594 Number of extensions: 43435 Number of successful extensions: 604 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 148 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)