BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0174.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase [Herb...   529   e-151

>gi|300312449|ref|YP_003776541.1| 6-phosphogluconolactonase
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  529 bits (1362), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/300 (87%), Positives = 281/300 (93%)

Query: 13  ATLIATSALSLAAAHAGAATVAYVSNADSQDIYVLRLNGDGSVNLIDKVDTGSTVMPLAL 72
           ATLIATSALSLA +HAGAAT+AYVS+ADSQDIYVLRLN DGSVNLIDKVDTGSTVMPLA+
Sbjct: 12  ATLIATSALSLATSHAGAATIAYVSHADSQDIYVLRLNNDGSVNLIDKVDTGSTVMPLAI 71

Query: 73  SPDHKFLYAALRGQPYSVVSYAIDPASGKLKALSKVPLADNMANIATDRSGRYLLAASYS 132
           SPD K+LYA+LR +PY+V SYAIDPASGKLKALSK PLADNMANIATDRSGRYLLAASY 
Sbjct: 72  SPDRKYLYASLRREPYAVASYAIDPASGKLKALSKAPLADNMANIATDRSGRYLLAASYF 131

Query: 133 GNRISVNAIGTDGIVQAPPLAVIPTGKNAHSVQVSPDNAFVFASNLGSDVILQYRFDPAT 192
           GN+ISVNAIG+DG VQ PPLAVIPTGKNAHSVQV P NAFVFASNLGSDVILQYRFDPA+
Sbjct: 132 GNKISVNAIGSDGAVQTPPLAVIPTGKNAHSVQVDPANAFVFASNLGSDVILQYRFDPAS 191

Query: 193 GTVTPNSPPSVATKAGAGPRHFVFSPDQRFVYSTNELDATVNTYAYDRQSGTLTLLASDS 252
           G VTPN+PPSVA+KAGAGPRHFVFSPDQRF+Y  NELDATV+TYAYDRQ+GTLTLL SDS
Sbjct: 192 GAVTPNTPPSVASKAGAGPRHFVFSPDQRFLYCANELDATVSTYAYDRQAGTLTLLGSDS 251

Query: 253 ALPEGFKTSEQLAAADLHLTPDGRFLYATERASNTLSAYRVDPAGGKLTRILNIPTETQP 312
           ALPEGF++SEQLAAADLHLTPDGRFLYATER SNTL+ YRVD A GKLTRILNIPTETQP
Sbjct: 252 ALPEGFQSSEQLAAADLHLTPDGRFLYATERTSNTLTGYRVDRASGKLTRILNIPTETQP 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,222,488
Number of extensions: 49856
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)