BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0173.p (589 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 860 0.0 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 395 e-111 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 393 e-110 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 380 e-106 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 380 e-106 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/596 (79%), Positives = 517/596 (86%), Gaps = 7/596 (1%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 60 MRNLTVRFSLMSALALFSCMIVVGA VGIFALGRAN ATEYVHEI E ++INDAYKDTT Sbjct: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 Query: 61 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 120 RTR+A R YA EK D AV ++ALKSA+ +YER LK++DE++KLPDL G++PA K EL Sbjct: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 Query: 121 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 180 +ESA+AL+++L KA+ LKAGD YS LN+ I+ G RFS ALDA+QKRAMELNDN Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 Query: 181 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 240 ++R REYN+VVW+V+ GLIGAMFLV+GVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKV+ Sbjct: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Query: 241 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 300 V S+NEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDT+AKEIAAGNMDLSSRTEQQASSL Sbjct: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 Query: 301 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 360 EETAASME+LTGTVKQNA+NALQANQLAHSASSTASKGGEVVSQVVDTMQAIN+SSRKIV Sbjct: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 Query: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 Query: 421 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 SVEKVEAGSQLVEQAGATM EVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE Sbjct: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 Query: 481 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVA---SPAAKPRPATMAPP-- 535 VTQQNAALVE+AAAAAQSLQAQATNLVGAVSIFKI+AHQVA PA+KPR A A P Sbjct: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPAGKPASKPRAAPAARPVT 540 Query: 536 --PAPAAPAAPALKTAPAAAAAPKAAPKLPPAKPAKASPPAPGSRIKDDAQDWEEF 589 A A AP++ A+ + P P KA+ SR KDDAQDWEEF Sbjct: 541 TPQVAAPAAPAVTAAAPSSPASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/556 (45%), Positives = 348/556 (62%), Gaps = 36/556 (6%) Query: 1 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRA-NQATEYVHEIAEHVIVINDAYKDT 59 ++NL+++ L A+ + + ++V A G+ + A + + E + ++ Sbjct: 3 IKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAADNTLIWI 62 Query: 60 TRTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKE 119 R R++L +A NDPA E + + L++ +++ LP VKK Sbjct: 63 GRQRTSLDQAALT----NDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVLVKK- 117 Query: 120 LIESARALSDLLAKASSQL-------KAGDTGAYSDLNDK--QINPAGGRFSKALDAFQK 170 +SD + K +L KAGD A +D K I A +AL ++ Sbjct: 118 -------VSDGIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQLDGQALSKYET 170 Query: 171 RAMELNDNAASER---TREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLL 227 + A+ R +R +++V ++AGL+ A + + LR + P+ RA+ Sbjct: 171 EQAAQSAGASMARYEASRNFSIVA--IVAGLLLAFY----SWWSLRRAIGEPMQRALRHF 224 Query: 228 DLVANGDLTTKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNM 287 D +A+GDLT V VHS NE+G+L ++ MQ++L TV VRS SD+I T +EIA+GN+ Sbjct: 225 DAIASGDLTEAVHVHSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNL 284 Query: 288 DLSSRTEQQASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVD 347 DLSSRTEQQA+SLEETA+SME+LT TVK NADNA QA LA +AS+ A+ G VV +VV Sbjct: 285 DLSSRTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQ 344 Query: 348 TMQAINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQR 407 TM+ I SS KI DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR Sbjct: 345 TMEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQR 404 Query: 408 SAAAAKEIKSLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTG 467 S++AAKEIK LI SV++V+AGS+LV QAG TM +V+ +VQRVTDI+ EI+ AS EQS G Sbjct: 405 SSSAAKEIKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAG 464 Query: 468 IEQVNRAITQMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKP 527 I+QV+ A+TQMDE TQQNAALVEQA+AAA+SL+ QA L+ V+IF+++ A P KP Sbjct: 465 IDQVSHAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNG---AGPTVKP 521 Query: 528 RPATMAPPPAPAAPAA 543 PA A A PAA Sbjct: 522 -PAA-AASRATVKPAA 535 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust. Identities = 231/397 (58%), Positives = 290/397 (73%), Gaps = 7/397 (1%) Query: 194 VIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVDVHSNNEIGRLFSA 253 +I G A+ L + + + L N + PL AV L VA+GDLT +++V S +E G L A Sbjct: 195 LIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGA 254 Query: 254 IRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSLEETAASMEQLTGT 313 ++ M ++L+ VS VR ++ I T + EIA GN+DLSSRTEQQASSLEETA+SME+LT T Sbjct: 255 LKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTST 314 Query: 314 VKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIVDIISVIDGIAFQT 373 V+QN NA +AN++A +AS AS GG VV++VVDTM+ IN+SSRKIVDIISVIDGIAFQT Sbjct: 315 VQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQT 374 Query: 374 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDASVEKVEAGSQLV 433 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK+LI SV KVE+GS LV Sbjct: 375 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLV 434 Query: 434 EQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEQAA 493 +AG TM E+V SVQRVT+++ EI+ A EQ +GIEQV++A+ QMD+VTQQNAALVEQAA Sbjct: 435 NEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAA 494 Query: 494 AAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAPPPAPAAPAAPALKTAPAAA 553 AA+QSLQ QA L AVS+F+++A Q A +P PA++A + PA + + + Sbjct: 495 AASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGVRPATRSSRL--PSP 552 Query: 554 AAPKAAPKLPPAKPAKASPPAPGSRIKD-DAQDWEEF 589 P A+P P PA PA GSR+ DA +W F Sbjct: 553 VGPSASPSASPMHPA----PASGSRLSSADADEWVTF 585 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust. Identities = 276/601 (45%), Positives = 368/601 (61%), Gaps = 42/601 (6%) Query: 8 FSLMSALAL-FSCMIVVGAAVGIFALGRANQATEYVHEIAEHV-IVINDAYKDTTRTRSA 65 S+ + LA+ FS +I+V A GI ALG A A +I + + +V+ND YK + Sbjct: 6 LSIATRLAIAFSILILVIA--GIVALGLARLA-----DINKALDLVVNDRYKKIAIINTI 58 Query: 66 LTR------AYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKE 119 + + NQ DPA A K+ ++ K DE ++L +A E K + Sbjct: 59 SGKVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRL--VANPEAKAKLD 116 Query: 120 LIESARALSDLLAKASSQLKA-GDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDN 178 + R L K +L++ GD A L ++ P + LD +L D Sbjct: 117 KVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQ 176 Query: 179 AASERTREYNMV-VWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTT 237 + + Y + MVIAG++ A F + R+I PL+RAV + + VA GDLT Sbjct: 177 SVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSIT-RPLSRAVEVAETVAAGDLTA 235 Query: 238 KVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQA 297 + HSN+E GRL A+ +M Q L V VR +DS+ T + +IA GN+DLSSRTE+QA Sbjct: 236 VIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQA 295 Query: 298 SSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSR 357 S+LEETA+S+E+LT +VKQNAD+ ++++LA +AS A++GG V QVV TM AIN+SS Sbjct: 296 SALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSH 355 Query: 358 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKS 417 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK Sbjct: 356 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKE 415 Query: 418 LIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQ 477 LI+ SV +V +G++LV QAG+TM VV S+++V+ IVGEI+ A+REQS GIEQVN+AI Q Sbjct: 416 LINDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQ 475 Query: 478 MDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAPPPA 537 MD TQQNAALVE+AAAAAQ+LQ QA L+ V +F++D +V P P+ Sbjct: 476 MDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLD--EVGGS---------GPAPS 524 Query: 538 PAAPAAPALKTAPAAAAAPKAAPKLPP---------AKPAKASPPAPGSRIKDDAQDWEE 588 AP AP L+ +AAAP+A LP A A A+P P S+ +D +++WE Sbjct: 525 AVAPVAPVLR--KVSAAAPRATKSLPAKPAAPAVTNAPAAPAAPALPASKREDKSEEWET 582 Query: 589 F 589 F Sbjct: 583 F 583 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust. Identities = 262/562 (46%), Positives = 348/562 (61%), Gaps = 38/562 (6%) Query: 14 LALFSCMIVVGAAVGIFA---LGRANQA-TEYVHEIAEHVIVINDAYKDTTRTRSALTRA 69 L F+C++++ +GIF+ L + NQA TE + +ND + AL+R Sbjct: 14 LLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLND-------MKVALSRV 66 Query: 70 YANQ--------KEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKELI 121 ANQ EK AV K+ +A E ++ + S EP +K L Sbjct: 67 RANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQIS--------EPG-EKALF 117 Query: 122 ESARALSD-LLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRA-MELNDNA 179 A D +A L A G + + PA + L+ K A + L+ + Sbjct: 118 PGVNARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSV 177 Query: 180 ASERTRE--YNMV-VWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLT 236 S R+ E Y+ VW+V + + + F+ R ++ TPL A L+A GDLT Sbjct: 178 QSTRSAETTYDQAQVWVVAILIGALLAGLALALFIAR-VIATPLRSAGEFAHLIAAGDLT 236 Query: 237 TKVDVHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQ 296 + S++E G+L +A+ +M +L VS+VRS +D+I T + +I++GN+DLSSRTE+Q Sbjct: 237 ADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQ 296 Query: 297 ASSLEETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESS 356 ASSLEETA++ME+LT TV+QNA+NA QANQLA SAS+ A +GG+VVSQV++TM +I+ SS Sbjct: 297 ASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASS 356 Query: 357 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 416 +KIVDIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK Sbjct: 357 KKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIK 416 Query: 417 SLIDASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAIT 476 +LID SV++V GS LV++AG T+ EVV+SVQRVTD++ EI+ AS EQ+ GIEQVN+AIT Sbjct: 417 TLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAIT 476 Query: 477 QMDEVTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDA---HQVASPAAKPRPATMA 533 QMDEVTQQNAALVE+AA+A+QSL QA L V +F++ QV A A Sbjct: 477 QMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAY 536 Query: 534 PPPAPAAPAAPALKTAPAAAAA 555 P PA A + T PA A A Sbjct: 537 TPRRPAVAGATSTAT-PALAVA 557 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,166,760 Number of extensions: 38416 Number of successful extensions: 493 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 72 Length of query: 589 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 498 Effective length of database: 1,188,985 Effective search space: 592114530 Effective search space used: 592114530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)