BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0170.p (357 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 471 e-134 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 137 1e-33 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 113 2e-26 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 112 5e-26 gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 112 5e-26 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 471 bits (1213), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/247 (94%), Positives = 238/247 (96%) Query: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVV 60 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSL PGDKLPTESEIMQTQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLE KKG NINIDPATITTMRDLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAASRRSDAQLQEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 GLAA+RR++ QLQEIREALDLF ANQ+ GGDTVGPDFRFHFAIANATGNRYFIEIISHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 MGVIPRKRINTAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 MGVIPRKRINTAELAHDQQASYL+RVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAGNPA 247 RRA A Sbjct: 241 RRAQQEA 247 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 18 QSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Q+LS V L I G+ G KLPTE+ + Q GVSRTVVREAI+RL+ G+VE R Sbjct: 8 QALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQ 67 Query: 78 GIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASRRSDAQLQEIRE 137 G G FV E + ID +++ +L ++ELR ++E E A AA RRS LQ I Sbjct: 68 GSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 Query: 138 ALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAELAHD 197 AL + +GGD V D FH A+A AT N YFI+ + L + + A Sbjct: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGNEARY 187 Query: 198 QQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 + + +V+ EHE I EAI GD AAR A + H+ N+ RL Sbjct: 188 E--DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRL 228 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 16 KPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 +P+ ++ V L I G + G KLP+E+++ VSR VVR+A+ RL+ LVE+ Sbjct: 28 RPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVES 87 Query: 76 RHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASRRSDAQLQEI 135 G GT+V E + T + ++ LELR+ +E E A +AA RR+ L + Sbjct: 88 LRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRM 147 Query: 136 REALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV-----IPRKRIN 190 L+ F A + GG DF FH AIA ATGN F++++ L V + R ++ Sbjct: 148 ERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMH 207 Query: 191 TAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 A Q A EH I+E I DAE AR AMR H+ N+R R+ Sbjct: 208 IAPWKRSQDA------MDEHRQIFELIRVQDAEGARRAMRGHIENARTRM 251 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 130/233 (55%), Gaps = 7/233 (3%) Query: 15 RKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVE 74 R +L+ V + L I G P +LP+E E+ + VSRTV+REAISRL++ GLV Sbjct: 25 RGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVG 84 Query: 75 TRHGIGTFVLEVKKGS----NINIDPATITTMRDLLALLELRISLETETAGLAASRRSDA 130 +R G GT VL + ++++D +++ +L ++ELR +E E A LAA RR+ A Sbjct: 85 SRRGSGTVVLPANPATPFRLDLDVDDGR-DSIQAVLRVIELRRGVEGEMAALAAQRRTSA 143 Query: 131 QLQEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRIN 190 Q I++AL +G D V DF FH AI+NA+ N + ++ L I Sbjct: 144 QNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQ--FLHAAIR 201 Query: 191 TAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRA 243 A + + ++++V+ EH + EAI+ GDAEAARAA H+ NS +RL+ A Sbjct: 202 VARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAA 254 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 114/238 (47%), Gaps = 3/238 (1%) Query: 7 PNPLLRPRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISR 66 P L R S S+ + + A I G L KLPTE E+ Q SRT VREA+SR Sbjct: 6 PPSLAASRTHRLSRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 Query: 67 LQAAGLVETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASR 126 L++ G+V +R G G +V + S+ I ++ D+ R +E AG+AA+ Sbjct: 66 LRSEGIVVSRRGSGNYVQRLPTLSSQG--SPQIASIHDVERYYAFRECVEVGAAGIAATA 123 Query: 127 RSDAQLQEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPR 186 R D +Q +R AL Q G V D H AIA AT N +FI I H +G I + Sbjct: 124 RQDEDVQAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEH-ALGPIRQ 182 Query: 187 KRINTAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAG 244 L Q ++ + EH+ I +AIA G A AAMR H+ ++R R+ G Sbjct: 183 CMELAQNLGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIFEGG 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,079,637 Number of extensions: 43294 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 15 Length of query: 357 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 271 Effective length of database: 1,212,660 Effective search space: 328630860 Effective search space used: 328630860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)