BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0160.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309913|ref|YP_003774005.1| hypothetical protein Hsero_0578...   540   e-155

>gi|300309913|ref|YP_003774005.1| hypothetical protein Hsero_0578
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  540 bits (1392), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 261/410 (63%), Positives = 315/410 (76%), Gaps = 6/410 (1%)

Query: 3   LAELKKAPYYQPQKGLFSVELKEFKGVRGCIPLDTPTGISIDRLPPGVKPPSPPNHTTGS 62
           +A++KKAPYY  QKGLF  +LKEF  +RGCIPL+TP GI+IDR  PGVKPP P    T  
Sbjct: 1   MADVKKAPYYHLQKGLFGSKLKEFSAIRGCIPLNTPRGIAIDRAAPGVKPPPPIPTATAE 60

Query: 63  KKGEKLARVPPPAQQSKTPQA-KAKRKTIPTELEFEVCENPPAFDLQDVPFAMDKLGWIV 121
           K  E+ A    P Q  + P+A + K+K  P +LE EVC+NPP FDLQDVP AMD LGW V
Sbjct: 61  KTQERSA----PPQDIQNPKASQQKKKAQPEQLEVEVCDNPPIFDLQDVPVAMDNLGWTV 116

Query: 122 SAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNSDIYTPRAV 181
           SAKLAR WFS  AHI++++P S QP+ND+ VTL+W LKFG V+KKYE+ L+ DIY   AV
Sbjct: 117 SAKLARRWFSGPAHIYDNNPKSIQPINDTDVTLEWVLKFGIVKKKYEELLSKDIYNAAAV 176

Query: 182 GAATDAVKGFVGHLF-ESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTISDGDTFNGLTLT 240
            +A   +   +   F E R+++LS +TS  L DL  FH +WQFQ  ++SDGDTF+G TLT
Sbjct: 177 DSAKQKILTRIRKRFSEERTNDLSFNTSQSLTDLLQFHIDWQFQLSSLSDGDTFDGFTLT 236

Query: 241 DLTGSLANFNIYAAVGNVEILAEKYFRYERGRTLYCLNATGKITHIYVYVKDNYSFNGKQ 300
           DLTG+LANFNIY AVG+V+I  EKYFRYE+ ++LYCL+A G ITH+Y YVKDNYSFNG+Q
Sbjct: 237 DLTGALANFNIYVAVGSVDISGEKYFRYEKSKSLYCLDAVGTITHVYAYVKDNYSFNGEQ 296

Query: 301 YLGHWNKHGIIIAPGTWLTGSSSSKKDTDIDIWLKAINKPVDTRKGLFGKFKEPDVYFPV 360
           YLGHWN+HGIIIAPGTWL GS+  K+D DIDIW+KAINKPVDTR+  F  F+E DVYFPV
Sbjct: 297 YLGHWNRHGIIIAPGTWLIGSNKPKRDLDIDIWVKAINKPVDTRRSFFANFRESDVYFPV 356

Query: 361 FNADYNRWREKHQRGGDFMVYSKPLHLKLKKPIDLKLGEICRPESLSSLG 410
           FNADYNRWREKH RG DFM+YSKP++LKLKKPI  KLGEICR E L+SL 
Sbjct: 357 FNADYNRWREKHDRGQDFMIYSKPVYLKLKKPIVFKLGEICRLEPLNSLA 406


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,314,217
Number of extensions: 53668
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)