BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0157.p
         (513 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...   869   0.0  

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score =  869 bits (2245), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/474 (88%), Positives = 442/474 (93%)

Query: 40  LSEQERALHVLNRLAYGPRPGDLEQVERMGVKRYIDQQLHPERIPLPDDLQARLAALPGL 99
           LSEQERALHVLNRLAYGPRPGDLE+VERMGVKRYIDQQLHPERIPLP  LQA LAALPGL
Sbjct: 101 LSEQERALHVLNRLAYGPRPGDLEEVERMGVKRYIDQQLHPERIPLPAQLQASLAALPGL 160

Query: 100 QMTPAQLFVDYGPPSFDRSASKEEQQAARQRAPRELTPQFHMARLLQASESPRQLEEVMT 159
           QMTPAQLFVDYGPPSFD+  SKEE+QAARQRAPRELTPQFHMARLLQA+ESPRQLEEVMT
Sbjct: 161 QMTPAQLFVDYGPPSFDKEGSKEEKQAARQRAPRELTPQFHMARLLQATESPRQLEEVMT 220

Query: 160 EFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSG 219
           EFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSG
Sbjct: 221 EFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSSG 280

Query: 220 AGTPGARGRFKGLNENYARELMELHTLGVNGGYQQADVITLARILSGWTIDVDAMKAGAS 279
           AGT GARGRFKGLNENYARELMELHTLGV+GGYQQADVITLARILSGWTIDV+AMKAGA+
Sbjct: 281 AGTRGARGRFKGLNENYARELMELHTLGVDGGYQQADVITLARILSGWTIDVNAMKAGAA 340

Query: 280 PFRFAAQRHDNGPKIFLGKPLQASGYQEGEAALDILANHPSTARFISTQLAEYFVADQPD 339
           PF FAAQRHD  PK+FLGKPL A+GYQEGEAALDILANHP+TARFISTQL +YFV+DQPD
Sbjct: 341 PFSFAAQRHDPSPKVFLGKPLAATGYQEGEAALDILANHPATARFISTQLVQYFVSDQPD 400

Query: 340 PALVNKLSQKFLASHGDIRAVLQTLFDSPQFWARSNYQTQFKTPYQFVVSALRAGDIPVR 399
           PALV KLSQ FL++HGD+RAVL+TLFDSPQFWARSNYQTQFKTPYQFVVSALRA DIPVR
Sbjct: 401 PALVQKLSQTFLSTHGDLRAVLKTLFDSPQFWARSNYQTQFKTPYQFVVSALRASDIPVR 460

Query: 400 NPKPVNGELGQFGMPLYGWLTPEGYKYSQAAWLNPGALLRRINLAGNLASGRSPIARVEG 459
           N KPVNG L QFGMPLYGWLTPEGYKYSQAAWLNP ALLRRIN AGNL +G+SPIAR EG
Sbjct: 461 NAKPVNGALAQFGMPLYGWLTPEGYKYSQAAWLNPDALLRRINFAGNLVNGKSPIARPEG 520

Query: 460 APAPSNTEAPPLDAAALLRTLGPAITPATAAQINAAPENQRAGLILGSPDFMKR 513
              PSN +A P+DA  LLRTLGPA+ P TAA+I AAPEN +AGLILGSPDFMKR
Sbjct: 521 EAPPSNADARPVDAQQLLRTLGPAVAPQTAAKILAAPENVQAGLILGSPDFMKR 574


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,829,341
Number of extensions: 84963
Number of successful extensions: 301
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,198,455
Effective search space: 508144920
Effective search space used: 508144920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)