BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0154.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312429|ref|YP_003776521.1| rhodanese-related sulfurtransfe...   268   2e-73
gi|300311651|ref|YP_003775743.1| rhodanese-related sulfurtransfe...    92   1e-20

>gi|300312429|ref|YP_003776521.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  268 bits (685), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/153 (83%), Positives = 133/153 (86%)

Query: 1   MSNDSILGTATQRATDGQLPYAGAVTPQEALALLQSDPAIKLVDVRTRAERDWVGVVQIP 60
           MS   IL  ATQRA D QLPY GAVTP EALALL+ D  IKLVDVRTRAERDWVGVVQI 
Sbjct: 1   MSTQDILSAATQRAVDAQLPYRGAVTPAEALALLEGDSRIKLVDVRTRAERDWVGVVQIA 60

Query: 61  SGQHLAVQWNLYPEGKPNPQFLEQLQEVARPGEVLLFLCRSGVRSKHAAKLATENGYTQC 120
             QHLAVQWNLYPEGKPNPQFLEQL+EV  P +VLLFLCRSGVRSKHAAKLATE+GYT C
Sbjct: 61  PAQHLAVQWNLYPEGKPNPQFLEQLREVTNPDDVLLFLCRSGVRSKHAAKLATEHGYTHC 120

Query: 121 FDILEGFEGNKDANGHRKTIEGWCKAGLPWVGA 153
           FDILEGFEGNKDA GHRKT+EGWCKAGLPWVGA
Sbjct: 121 FDILEGFEGNKDAAGHRKTVEGWCKAGLPWVGA 153


>gi|300311651|ref|YP_003775743.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 92.4 bits (228), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 83/141 (58%), Gaps = 7/141 (4%)

Query: 12  QRATDGQLPYAGAVTPQEALALLQSDPAIKLVDVRTRAERDWVGVVQIPSGQHLAVQWNL 71
           Q   DG LPYAG +TP++A AL+Q+   + LVDVRT  ER +VG   +P   H+A  W  
Sbjct: 32  QAIADG-LPYAGGITPKQAWALVQTGKVL-LVDVRTAEERKFVG--HVPDSLHVA--WAT 85

Query: 72  YPEGKPNPQFLEQLQEVARPGEV-LLFLCRSGVRSKHAAKLATENGYTQCFDILEGFEGN 130
                 NP+F+ +L+      +V  L LCRSG RS  AA+ AT+ G +  F++LEGFEG 
Sbjct: 86  GTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRSAAAAEAATKAGLSCIFNVLEGFEGE 145

Query: 131 KDANGHRKTIEGWCKAGLPWV 151
            DA   R   +GW   GLPWV
Sbjct: 146 LDAAQQRGKADGWRFHGLPWV 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 531,992
Number of extensions: 21458
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)