BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0152.p
         (438 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312427|ref|YP_003776519.1| glutamine synthetase [Herbaspir...   904   0.0  

>gi|300312427|ref|YP_003776519.1| glutamine synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/438 (98%), Positives = 438/438 (100%)

Query: 1   VTVPVSHFDIDKFESGHAFDGSSIAGWKGIEASDMLLIPDPNTANIDPFMEETTLFMQCD 60
           V+VPVSHFDIDKFESGHAFDGSSIAGWKGIEASDMLLIPDPNTANIDPFMEETTLFMQCD
Sbjct: 34  VSVPVSHFDIDKFESGHAFDGSSIAGWKGIEASDMLLIPDPNTANIDPFMEETTLFMQCD 93

Query: 61  VIEPSDGKGYDRDPRSIAKRAEAYLKSSGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVK 120
           VIEPSDGKGYDRDPRSIAKRAEAYLKSSGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVK
Sbjct: 94  VIEPSDGKGYDRDPRSIAKRAEAYLKSSGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVK 153

Query: 121 IDSEEASWSTGAEIEGGNSGHRPTVKGGYFPVPPVDSFQDMRSEMSLILESLGIPVEVHH 180
           IDSEEASWSTGA+IEGGNSGHRPTVKGGYFPVPPVDSFQDMRSEMSLI+ESLGIPVEVHH
Sbjct: 154 IDSEEASWSTGAKIEGGNSGHRPTVKGGYFPVPPVDSFQDMRSEMSLIIESLGIPVEVHH 213

Query: 181 HEVAGAGQNELGTKFSTLVERADWTQTLKYVIWNVAHTYGKTATFMPKPLVGDNGSGMHV 240
           HEVAGAGQNELGTKFSTLVERADWTQT+KYVIWNVAHTYGKTATFMPKPLVGDNGSGMHV
Sbjct: 214 HEVAGAGQNELGTKFSTLVERADWTQTMKYVIWNVAHTYGKTATFMPKPLVGDNGSGMHV 273

Query: 241 HQSVWKDGKNLFAGDGYAGLSEFALYYIGGIIKHAKALNAITNPGTNSYKRLVPGFEAPV 300
           HQSVWKDGKNLFAGDGYAGLSEFALYYIGGIIKHAKALNAITNPGTNSYKRLVPGFEAPV
Sbjct: 274 HQSVWKDGKNLFAGDGYAGLSEFALYYIGGIIKHAKALNAITNPGTNSYKRLVPGFEAPV 333

Query: 301 KLAYSARNRSASIRIPHVANPKGRRIETRFPDPLANPYLCFSALLMAGLDGVQNKIHPGE 360
           KLAYSARNRSASIRIPHVANPKGRRIETRFPDPLANPYLCFSALLMAGLDGVQNKIHPGE
Sbjct: 334 KLAYSARNRSASIRIPHVANPKGRRIETRFPDPLANPYLCFSALLMAGLDGVQNKIHPGE 393

Query: 361 AATKDLYHLPPEEDKLIPTVCASLDEALEHLDKDREFLTRGGVFTDSMIDAYIELKMQEV 420
           AATKDLYHLPPEEDKLIPTVC+SLDEALEHLDKDREFLTRGGVFTDSMIDAYI+LKMQEV
Sbjct: 394 AATKDLYHLPPEEDKLIPTVCSSLDEALEHLDKDREFLTRGGVFTDSMIDAYIDLKMQEV 453

Query: 421 QRFRMTTHPIEFDMYYSL 438
           QRFRMTTHPIEFDMYYSL
Sbjct: 454 QRFRMTTHPIEFDMYYSL 471


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,499,466
Number of extensions: 67528
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,203,190
Effective search space: 421116500
Effective search space used: 421116500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)