BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0139.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114...   289   1e-79

>gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  289 bits (739), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 167/190 (87%)

Query: 1   MKKLLSSFLVASAFVAMASSASAADLERTRTLVWTDATSTFNARFGDGTTGQTFLENFTF 60
           MKKL+ S L+ASAF+ MAS+ASAADLERTR+L+WTDATSTFNAR+G+GTTG TFLENFTF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATSTFNARYGEGTTGLTFLENFTF 60

Query: 61  NISGAGASVSSALVSIALDGLSRVGINSFTLSGNGQTYTGTELSNGDLQTFSLRTNGLTS 120
            +   G++VSSA+VSIALDGLSR+GI+SFTLSGNG+T TGT L  GD QTFSLRT+GL++
Sbjct: 61  TVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNGRTITGTPLLEGDTQTFSLRTDGLST 120

Query: 121 GLYTLSVAGTVLGSAGGSFAGNISVAPVPEASTTAMMIGGLGLIGFAAYRRRKAGDKGDK 180
           GLYTLSVAGT+LGS GGSFAGNISVAPVPEASTTAMM+GGLG+IGFAAYRRR+   +   
Sbjct: 121 GLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRRKAGEDAP 180

Query: 181 AQMNAQMMPA 190
            Q N Q+MPA
Sbjct: 181 QQRNDQLMPA 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 484,319
Number of extensions: 18584
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)