BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0138.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312412|ref|YP_003776504.1| outer membrane protein V [Herba...   366   e-103

>gi|300312412|ref|YP_003776504.1| outer membrane protein V
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  366 bits (940), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/248 (71%), Positives = 207/248 (83%), Gaps = 2/248 (0%)

Query: 2   LTLACCALPVLAQQAAPATATPDPLQLQDRLTGDIGAGVYRVDRNGPDADRSNHVLPYAY 61
           L+LACCA  + A     A    DPLQLQDR+TGDIG GVYR+DRNG D      VLPYAY
Sbjct: 8   LSLACCA--LPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAY 65

Query: 62  ADYGRFFARLDTFGVKTVRMGYGYLELAGRVSLDGFDAQRGLQRRSDPIPLGIGTYQETP 121
            DYGRFFAR+DTFGVKT RMGYGYLELAGR++L+GFDAQ GLQRRSDPIPLG+G++QETP
Sbjct: 66  FDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQGGLQRRSDPIPLGLGSFQETP 125

Query: 122 IGGFFLNVFRDFNKSHGTLAEAIYAAQIDLGPVTLYPQLGVEYRSGSYNDYFVGVTSSEA 181
           IG FFLNVF DFNKSHGTLAEAIYAAQ+D+GPV+ YPQ+GVEYR   YNDYF GV+  EA
Sbjct: 126 IGAFFLNVFHDFNKSHGTLAEAIYAAQLDVGPVSFYPQVGVEYRDSRYNDYFYGVSGQEA 185

Query: 182 AASGLRQYSAGASTSPTLGLAADVPLTGDWHLNLHLRRKWLDNAVADSPLVRRHTDDTAI 241
           ++SGL  Y AG+STSP LGL AD+P++G+W LNL LRRKWLDNA++DSP++RR TDD AI
Sbjct: 186 SSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAI 245

Query: 242 VAVSYRFK 249
           +A++YRFK
Sbjct: 246 LALTYRFK 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 785,248
Number of extensions: 36018
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)