BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0137.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 570 e-164 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 84 2e-17 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 75 8e-15 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 570 bits (1468), Expect = e-164, Method: Compositional matrix adjust. Identities = 285/359 (79%), Positives = 307/359 (85%), Gaps = 33/359 (9%) Query: 11 HSDLFKPMQLGAVQLQNRIVMAPLTRSRAKAGDVPTELAAEYYAQRAGAPLYFL------ 64 +SDLFKP+QLGAVQLQNRIVMAPLTRSRA+AGDVP++LAAEYYAQRAGA L Sbjct: 7 NSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIAEATQIS 66 Query: 65 ---------------------------VHAKGGRIFLQLWHVGRISHPDLQPGNALPVAP 97 VHAKGGRIFLQLWHVGRISHPDLQPG+ALPVAP Sbjct: 67 PEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGHALPVAP 126 Query: 98 SAIKPEGNAFTESGFKPFVEPRALDASELPAIVEQYKIAAQLSLQAGFDGVEIHAANGYL 157 SA++PEG AFTESGFKPFV PRAL+A+ELPAIVEQYK AAQLS+QAGFDGVEIHAANGYL Sbjct: 127 SAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIHAANGYL 186 Query: 158 LDQFLRDKTNQRTDNYGGSIENRARLLLEVVEAVTSVIPSERVGIRLSPISPANDIADSD 217 LDQFLRDKTNQRTD YGGSIENRARLLLEVV+AVTSV+PSERVGIRLSPISPANDIADSD Sbjct: 187 LDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISPANDIADSD 246 Query: 218 PKALFSYVVEQLNRYKLVYLHVVEGATGGPREVEGGFDLQILRDLFKGIYIANNGYDLEM 277 PKALFSYVVEQLNR+KLVYLHVVEGATGGPREV GGFDLQ+LRDLFKG+YIANNGYDL+M Sbjct: 247 PKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIANNGYDLDM 306 Query: 278 AVKARDRNLADLVAFGRPWIANPDLVERFKAGAPLAEINQATLYGGGAEGYTDYPTLQQ 336 A++AR N ADLVAFGRPWIANPDLV+RF GA LA NQATLYGGGA GYTDYP ++Q Sbjct: 307 ALQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYTDYPPMKQ 365 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/277 (29%), Positives = 128/277 (46%), Gaps = 49/277 (17%) Query: 10 LHSDLFKPMQLGAVQLQNRIVMAPLTRSRAKAGDV----------------------PTE 47 + S LF P+ L V L NRI ++P+ + A+ G V T Sbjct: 1 MSSHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 48 LAAE---------YYAQRAGAPLYFL---VHAKGGRIFLQLWHVGR---ISHPDLQPGNA 92 + AE + APL + + +G +QL H GR I P P + Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGS 120 Query: 93 LPVAPSAIKPEGNAFT--ESGFKPFVEPRALDASELPAIVEQYKIAAQLSLQAGFDGVEI 150 +P + P+ + + G+ P+A+ ++ A+V+ + AAQ +L AGF +E+ Sbjct: 121 VPPSAGGWTPQAPSALPFDDGYS---TPQAMSVEQIGALVQAFADAAQRALAAGFKVIEL 177 Query: 151 HAANGYLLDQFLRDKTNQRTDNYGGSIENRARLLLEVVEAVTSVIPSER-VGIRLSPISP 209 H A+GYL QFL +NQR+D YGGS ENR R LLE+ A +V P E + +RLS Sbjct: 178 HGAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLS---- 233 Query: 210 ANDIADSDPKALFSYVVEQLNRYKLVYLHVVEGATGG 246 A D D + + Q R + + + +V+ ++GG Sbjct: 234 ATDWVDGGWTPEETVTLSQ--RLRELGVDLVDVSSGG 268 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 99/222 (44%), Gaps = 37/222 (16%) Query: 12 SDLFKPMQLGAVQLQNRIVMAPLTRSRAKAGDVPTELAAEYYAQRAGAPLYFLVHAKG-- 69 S LF+P +L V L+NRI + P+ + A G V + Y + G +V A Sbjct: 2 SALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAVS 61 Query: 70 --GRI---FLQLWH--VGRISHPDLQPGNALPVAP-----------SAIKP-EGN----A 106 GRI +W +G+ P +Q A P SA +P EG+ A Sbjct: 62 PEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAA 121 Query: 107 FTESGFKPFVE------------PRALDASELPAIVEQYKIAAQLSLQAGFDGVEIHAAN 154 G+ P+A+ ++ + + + AA + +AGF+ +E+H A+ Sbjct: 122 DDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAH 181 Query: 155 GYLLDQFLRDKTNQRTDNYGGSIENRARLLLEVVEAVTSVIP 196 GYL F NQR D YGGS+ENRAR LLE + AV V P Sbjct: 182 GYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWP 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,142,308 Number of extensions: 51705 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 4 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)