BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0136.p
         (791 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312409|ref|YP_003776501.1| leucyl aminopeptidase [Herbaspi...   854   0.0  
gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...   444   e-125

>gi|300312409|ref|YP_003776501.1| leucyl aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/482 (91%), Positives = 458/482 (95%)

Query: 1   MDFSTKTLDAKNALTGVKTGALVVGIYENRKLSKAAGALDKLGAISAALKSGDISGKPGS 60
           MDFSTKTLDAKNA+T VKTGALVVGIYENRKLSKAAGALDKLGAISAALKSGDISGKPGS
Sbjct: 1   MDFSTKTLDAKNAVTAVKTGALVVGIYENRKLSKAAGALDKLGAISAALKSGDISGKPGS 60

Query: 61  TLLLRGVTGIAAERIVLLGLGNEDEAADKNFAAASSALVRALATLGCDDAALALPFDAIK 120
           TLLLRGVTGIAAERIVLLGLG E+E ADK+FA ASSALVR LATLGCDDAALALPFD +K
Sbjct: 61  TLLLRGVTGIAAERIVLLGLGAEEEIADKSFATASSALVRTLATLGCDDAALALPFDGVK 120

Query: 121 GRGLDWAIRTVVLAGRDAAYRSDTMKSKKDPAPTGVRKITLLVAAEQGAAAKAALGEAVA 180
           GR L W IR VVLAGRDA YRSDTMKSKKDPAPTGV+K+TLLV A     AKAAL EAVA
Sbjct: 121 GRDLTWTIRNVVLAGRDAVYRSDTMKSKKDPAPTGVKKVTLLVPASDSVTAKAALAEAVA 180

Query: 181 LANGMALTKELGNLPGNVCTPTYLATTAKKLAKEFKLGVEVLERKQLEALKMGSFLSVTN 240
           LANGMALTKELGNLPGNVCTPTYLA TAKKLAK+F LGVEVL+RKQL+ALKMGSFLSVTN
Sbjct: 181 LANGMALTKELGNLPGNVCTPTYLANTAKKLAKQFGLGVEVLDRKQLQALKMGSFLSVTN 240

Query: 241 GSDQPPKFIVLKHLGGKAKDAPVVLVGKGITFDTGGISLKPGLNMDEMKYDMCGAASVLG 300
           GSD+PPKFIVLKH+GGKAKDAPVVLVGKGITFDTGGISLKPGLNMDEMKYDMCGAASVLG
Sbjct: 241 GSDEPPKFIVLKHMGGKAKDAPVVLVGKGITFDTGGISLKPGLNMDEMKYDMCGAASVLG 300

Query: 301 TFRTIAELGLKLNVIGVIPTCENMPSGRATKPGDIVTSMSGQTIEVLNTDAEGRLILCDA 360
           TFRTIAELGLK+NVIGVIPTCENMPSGRATKPGDIVTSMSGQTIEVLNTDAEGRLILCDA
Sbjct: 301 TFRTIAELGLKMNVIGVIPTCENMPSGRATKPGDIVTSMSGQTIEVLNTDAEGRLILCDA 360

Query: 361 LTYVERFKPAAVVDIATLTGACVVALGHHNTGLFTREDDTHDQLANALLAAGKESGDTAW 420
           LTYVERFKPAAVVDIATLTGAC+VALGHHN+GLFTRED+ HD LANALLAAG++SGDTAW
Sbjct: 361 LTYVERFKPAAVVDIATLTGACIVALGHHNSGLFTREDEAHDALANALLAAGRDSGDTAW 420

Query: 421 RMPIQDAYQEQLKSNFADIANIGGQPGGSVTAACFLERFTRKYTWAHLDIAGTAWKSGAA 480
           RMPIQ+ YQEQLKSNFADIANIGGQP GSVTAACFLERFTRKYTWAHLDIAGTAWKSGAA
Sbjct: 421 RMPIQEVYQEQLKSNFADIANIGGQPAGSVTAACFLERFTRKYTWAHLDIAGTAWKSGAA 480

Query: 481 KG 482
           KG
Sbjct: 481 KG 482


>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 244/308 (79%), Gaps = 10/308 (3%)

Query: 484 QHAVLRWFFFIFLLLAASLGPILPGPAMAQDAPMPPAQTVRFPSSDGKTTLTGYLYDPFG 543
           Q A LRW FF    L   L         AQ   +PPAQTV FPS+DG+T LT YL+ P G
Sbjct: 44  QAAGLRWLFFALAWLTLPLA--------AQT--LPPAQTVHFPSADGRTELTAYLFTPAG 93

Query: 544 AGPHPAIVLLHGRAGLYSSRVNAACTQIGPAIPSPCDASTLTARHLDWTRYWLARGYVVL 603
           AGPHPA+V+LHGRAG YSSR+N  CT+IGPA+PSPCDASTL+ RH  W  YW+ RGY+ L
Sbjct: 94  AGPHPAVVMLHGRAGPYSSRINGDCTRIGPALPSPCDASTLSQRHQAWAAYWIERGYLAL 153

Query: 604 LVDSFGPRGVAHGFGRHTHGAPERAAVNELSVRPLDAEGALQWLATRSEVDVRRIMLQGW 663
           LVDS+GPRGVAHGFGRHTHGAPERA VNEL+VRPLDAEGAL WLA RS+V+  RI+LQGW
Sbjct: 154 LVDSYGPRGVAHGFGRHTHGAPERAEVNELTVRPLDAEGALAWLAPRSDVNPARILLQGW 213

Query: 664 SNGGSTALNVMQRQAARPAGDAPSFAAALVFYPGCGKQALLSSHPEFDKPMQVLLGSADE 723
           SNG STALNVMQRQA+R  G APSFA A+VFYPGCG QALLSS PE D+P+QVLLG+AD+
Sbjct: 214 SNGASTALNVMQRQASRLGGTAPSFAGAMVFYPGCGPQALLSSSPELDRPVQVLLGAADQ 273

Query: 724 EVSPLTCERVLRQSIRLRQAPPPVVTLYAGATHDFDDPGRARQSVEANRAARQDAQTRLG 783
           EVSP  C RVLRQ+I +R+   PVVTLY GATHDFDDPGR RQ++ ANR AR DA TRLG
Sbjct: 274 EVSPQRCLRVLRQAIPMRRNSSPVVTLYPGATHDFDDPGRPRQAIPANRQARADALTRLG 333

Query: 784 PWLDQIPP 791
           PW DQ+PP
Sbjct: 334 PWADQVPP 341


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,439,449
Number of extensions: 102071
Number of successful extensions: 353
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 2
Length of query: 791
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 698
Effective length of database: 1,179,515
Effective search space: 823301470
Effective search space used: 823301470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)