BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0132.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III C-methyltr...   309   2e-85
gi|300312405|ref|YP_003776497.1| non-chaperonin molecular chaper...   235   4e-63
gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransfera...    64   2e-11

>gi|300312404|ref|YP_003776496.1| uroporphyrinogen-III
           C-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  309 bits (791), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/164 (97%), Positives = 162/164 (98%)

Query: 1   VQVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEANHIP 60
           V VSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALE +HIP
Sbjct: 70  VLVSVGKRSGQRSTAQPVINQKLVEAAQQYRRVVRLKGGDPMLFGRADEEMRALEEHHIP 129

Query: 61  YEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPDEVRMPNGDTLVQYMGGR 120
           YEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPDEVRMPNGDTLVQYMGGR
Sbjct: 130 YEIVPGITAALAAASAAKRPLTRRGIARSVSLFTSSTGVDEPDEVRMPNGDTLVQYMGGR 189

Query: 121 EATATAQRLLALGHAPDTPVVVVENCSRPDEHIYHLQLAGLEAG 164
           EATATAQRLLALGHAPDTPVVVVENCSRPD+HIYHLQLAGLEAG
Sbjct: 190 EATATAQRLLALGHAPDTPVVVVENCSRPDQHIYHLQLAGLEAG 233


>gi|300312405|ref|YP_003776497.1| non-chaperonin molecular chaperone
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 123

 Score =  235 bits (599), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 120/123 (97%)

Query: 197 MHLLHDPAAPAAAAIDFEAFLKVDIRIGTIIAADAFPEARKPAFKLKIDFGPGIGVRQSS 256
           MHLLHDPAAP AA+IDF++FLKVDIR+GTI++A+AFPEARKPAFKLKIDFGP IGVRQSS
Sbjct: 1   MHLLHDPAAPPAASIDFDSFLKVDIRVGTILSAEAFPEARKPAFKLKIDFGPAIGVRQSS 60

Query: 257 AQITTHYTLEQLVGRQVAAVVNFPPRQIGKFMSEVLTLGFPDAQGEVVLFKPDQAVPNGA 316
           AQITTHYTL+QLVGRQVAAVVNFPPRQIGKFMSEVLTLGFPDAQGEVVLF PDQAVPNGA
Sbjct: 61  AQITTHYTLDQLVGRQVAAVVNFPPRQIGKFMSEVLTLGFPDAQGEVVLFSPDQAVPNGA 120

Query: 317 RLF 319
           RLF
Sbjct: 121 RLF 123


>gi|300311963|ref|YP_003776055.1| precorrin-4 C11-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 24  VEAAQQYRRVVRLKGGDPMLFGRADEEMRALEANHIPYEIVPGITAALAAASAAKRPLTR 83
           V A +Q   VVRL  GDP ++G   E+MR L+A  I YE+VPG+++  AAA+A    LT+
Sbjct: 67  VRAQEQGIDVVRLHSGDPAIYGATAEQMRRLDALGIAYEVVPGVSSFTAAAAAVSAELTK 126

Query: 84  RGIARSVSLFTSS---TGVDEPDEV--RMPNGDTLVQYMGGREATATAQRLLALGHAPDT 138
             +++SV L   S   + V E + +     +  T+  ++ G         LL L + P T
Sbjct: 127 PEVSQSVILTRVSGRASAVPESESIASLAAHRATMCIFLSGPHLKKIVTDLL-LHYPPAT 185

Query: 139 PVVVVENCSRPDEHIYHLQLAGLEAGDDRAGAGGSGLKLMXAGAGDDR 186
           PV +V   + P++ IY  QL  +   + R     + + L+ A    ++
Sbjct: 186 PVTLVYRATWPEQRIYQGQLDKVLEENKRGEWNLTTMMLVGAALNKEQ 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 841,055
Number of extensions: 30710
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)