BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0120.p (658 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr... 86 1e-17 gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 67 5e-12 gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pes... 59 2e-09 >gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate transport protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 155/677 (22%), Positives = 258/677 (38%), Gaps = 121/677 (17%) Query: 61 PVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLSGPRD----FPLDLRGFGTNGDQN 116 P A TV+ ++I G + +A+R++ GV + SG + +RG Sbjct: 69 PGARTVVKKQEIESTGAVSIGDAMRRIPGVQSSDN-SGTAGSAIALNIGVRGLAGRYSPR 127 Query: 117 MVVLVDGVRISENELATPLLSAIPI--ETIERIEIVRGGSSVLYGSGATGGTIQIITRR- 173 +L+DG+ ++ P LS P+ IE I++VRGG +V +G GG I TR Sbjct: 128 STILLDGIPMAVAPYGQPQLSFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSI 187 Query: 174 PQANTVRGTVIGEVGSNGQRAGRA-----AVSRGWDNMSIDASYAKSHADNWRDNSKSNQ 228 P + G S GQ G A + + + Y+ WRD S + Sbjct: 188 PTTPGISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQEGSGWRDKSDEHL 247 Query: 229 ENFSTTVQWFASDWRFGLRANLSRADF--GLPGSLSQAQYDANARQTSKPLDH-----GS 281 +F+ +++ S L A ++ D PG LS AQY A+ Q+++ D+ Sbjct: 248 NDFALKMRYEISPTS-ELYAKINYYDVLSRTPGGLSVAQYAADPFQSTRQRDNWGGTRKG 306 Query: 282 YDNDSITAFLERRFGAFDVAAELSHREKISRSTYVSSASTAQA----NIRTTQFSPR--- 334 +D + +R+ F++ S + +ST ++ A T + N T PR Sbjct: 307 FDVGYLNTISDRQ--EFEIRTYFSQATR--QSTLINPAGTRLSHQPRNYETLGIEPRYTQ 362 Query: 335 -----------------LRHVLDSGLWKNEAIAGV--DLAEWSSATNASYGNSDASQHSK 375 +R D ++ + GV ++ ++T+A G Sbjct: 363 RFAWGGTTHDVTVGYRYVRERGDDNVYSEAVLTGVLSGFTQFQNSTDAHAG--------- 413 Query: 376 ALYLRDEIEFDRNARVAAGVRREQFTQQSDSGAYGRTSAVNAWDLQAS-YAPLPLLR-GF 433 Y+ D+I F + R+ G+R E R N Q S PLP + + Sbjct: 414 --YIDDKIAFGK-WRITPGLRFEHVQST-------RYDVANNASYQVSNNKPLPSINVAY 463 Query: 434 VKTGQ-------SYRLATADENGFTALPSGAVLKPQVSHDLELGATLGHTARQVTLRWFR 486 + T Q + + + S L P+++ +E G +RW Sbjct: 464 LLTEQLTLFSNYNTSFGVVQNSQLNTMSSANPLSPELAKTIEGG-----------VRWKS 512 Query: 487 HRVRDE-----LYYDPTANAGFGANS----NLAPTRHQGVELEGRV---QLTETLGWS-- 532 R E + +D + G N N+ T+H G+EL Q + GWS Sbjct: 513 ARASAEATVFHIDFDNQIVSVQGTNPSVFRNIGKTQHDGIELAMDYAFDQQSVLKGWSVY 572 Query: 533 ATYQHINARFEEGDNSGKQLALVPANTLSTRLNWKSGQQSADVGARWVDRQRMGNDFANT 592 A Y + A + G N GK L T + +KSG ++ RQ +D ANT Sbjct: 573 ANYTYTRALQKSGANPGKDLPFYARTTDTVGTRFKSGPWGFNLSTTHQGRQF--SDEANT 630 Query: 593 CA--------RMPSFTTFDARYAVRV---SAWEFAVTGTNLADRKYYSQAYDCSGGAVSG 641 A +P F ++A+ +V ++ NL DR+Y+++ D + G + G Sbjct: 631 IAESADGSIGEIPGFRLWNAQVDWKVPGTKGFDVFAGINNLTDRRYFTRTTDNNLGKLVG 690 Query: 642 IYPEDGRALKFTARYDF 658 R + RY F Sbjct: 691 A----PRTVYVQGRYSF 703 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 126/302 (41%), Gaps = 40/302 (13%) Query: 377 LYLRDEIEFDRNARVAAGVRREQFTQQSDSGAYG----RTSAVNAWDLQASYAPLPLLRG 432 LY++D+I + ++ AG+R ++F S + G RT+ + + + LP Sbjct: 436 LYVQDKITLAAHWKMLAGLRWDRFEVDSRNRRNGVRSERTAHALSPRIGVVWEALPGQHA 495 Query: 433 FVKTGQSYRLATADENGFTALPSGAV--LKPQVSHDLELGATLGHTARQV--TLRWFRHR 488 ++ +++ D G T G LKPQ S +E G R++ TL WF+ Sbjct: 496 YLSWSKNFAPVGGDVIGITPDARGNFNDLKPQFSRQVEAGIKSEWLDRRLSTTLAWFQLE 555 Query: 489 VRDELYYDPTANAGFGANSNLAPTRHQGVELEGRVQLTETL----GWS--------ATYQ 536 + + DP GF S L R++G+EL +L GW+ A + Sbjct: 556 LFNRNVADPV-RPGFFEQSGL--ERNRGIELSVEGELAAPWFVRAGWAIQSAKIVQAEPK 612 Query: 537 HINARFEEGDNSGKQLALVPANTLSTRLNWKSGQQSADVGARWVDRQRMGNDFANTCARM 596 + R G L L A TL W + GAR+ DR + + Sbjct: 613 FVGKRASGVSGRGGSLFLSYAPTL----GWFAELGLTVEGARYADR--------DNLLEL 660 Query: 597 PSFTTFDARYAVRVSAWEFAVTGTNLADRKYYSQAYDCSGGAVSGIYPEDGRALKFTARY 656 P++T +D + R+ EF + TNLA+R+YY S +S + P RAL TA Y Sbjct: 661 PAYTRWDGKMGYRLDEAEFTLAVTNLANRRYYE-----SATGLSQVRPGAPRALLLTAAY 715 Query: 657 DF 658 F Sbjct: 716 KF 717 Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 28/230 (12%) Query: 39 TSQPLSAVVVSASRFPNDPAFPPVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLSG 98 + P + V +A+R DP P + ++ EQ+ G A L GV G S+S Sbjct: 59 SPDPRARRVGTATRSAADPMEVPQSIQSVSVEQVSVYG---ARTLAGALLGVPGISSISD 115 Query: 99 PRDFPLDLRGFGTNGDQNMVVLVDGVRISENELATPLLSAIPIETIERIEIVRGGSSVLY 158 R +RGF + D +L+DG+R + + IER+E++RG +SVLY Sbjct: 116 TRFDAFRIRGFSSAND----LLLDGMRDDPQYVRG-------LGNIERVEVLRGPASVLY 164 Query: 159 GSGATGGTIQIITRRPQANTVRGTVIGEVGSNGQRAGRAAVSRGWD-----NMSIDASYA 213 G G+ GG I I+++P + + +GS AG + W+ + ++ + Sbjct: 165 GRGSGGGVINRISKQPGQDVASQATL-SLGS----AGLLGAALDWNRPLAPHWALRINTG 219 Query: 214 KSHADNWRDNSKSNQENFSTTVQWFASDWRFGLRANLSR----ADFGLPG 259 + HA ++RD ++ F+ ++W + + L+A D G+PG Sbjct: 220 REHAGSFRDTVNGTRQYFAPALKWESGRDSWLLQAEYDEYERVPDRGIPG 269 >gi|300311951|ref|YP_003776043.1| siderophore (yersiniabactin/pesticin) receptor FyuA protein [Herbaspirillum seropedicae SmR1] Length = 703 Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 17/157 (10%) Query: 30 FAASTHAADTSQPLSAVVVSASRFPNDPAFPPVAATVITAEQ--IREAGIDNANEAIRKL 87 A AAD L+ V+V+A++ + V +V+ EQ + +A + N + R L Sbjct: 28 LAQQVGAADERTRLAPVIVTANK--REQTLESVNGSVVVLEQPQLDDAQVRNTQDLGRVL 85 Query: 88 GGVYGRQSLSGPRDFPL-DLRGFGTNGD---QNMVVLVDGVRISENELATPLLSAIPIET 143 GV + + SG +PL +RG + D + + VDGV P+L + Sbjct: 86 PGV--QMAGSGSMHYPLISVRGVTSAQDFYNPALTLYVDGVP------QMPILVNQSLLD 137 Query: 144 IERIEIVRGGSSVLYGSGATGGTIQIITRRPQANTVR 180 +ER+E+++G LYG A GG I + TR+P NTVR Sbjct: 138 VERVELLKGPQGTLYGKSAEGGVINVTTRQPD-NTVR 173 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,129,968 Number of extensions: 90931 Number of successful extensions: 305 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 7 Length of query: 658 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 567 Effective length of database: 1,188,985 Effective search space: 674154495 Effective search space used: 674154495 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)