BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0119.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313668|ref|YP_003777760.1| Fe3+-siderophore ABC transporte...   123   2e-29

>gi|300313668|ref|YP_003777760.1| Fe3+-siderophore ABC transporter
           permease [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/282 (36%), Positives = 149/282 (52%), Gaps = 9/282 (3%)

Query: 45  SLRVPRALTAFAVGGALALSGALMQVLLRNPLADPYVLGLSGGSAAGALLAMLAALRLGW 104
             R+P A+ A  VG  L L G  MQ +L NPLA PY LG+S    A A      A+   W
Sbjct: 85  EFRLPTAVMALLVGMCLGLGGGEMQTVLDNPLASPYTLGIS----AAAAFGAALAITFNW 140

Query: 105 PVQAVTAPGALLGAGLAMLLLFGLVRPSLRHLAVSPLLSSQRLLLTGVMLAAGFGALISL 164
              A+ A   +     A  L   LV   L  +A     S+  ++L G+ L   F ALI L
Sbjct: 141 RFPALPAGMTVSACACAAALASVLV---LERVARWRGGSTLGVILFGIALVYSFQALIML 197

Query: 165 ALSIAPDAQLRGMVFWLIGDLDDARLLPLMAPVLLLALL--WSWRHAPSLNLLARGDAFA 222
              +A +  L+G+VFW +G L  A    +    L  AL+  +S R A  L  L  G+  A
Sbjct: 198 LQFVASEEALQGIVFWTMGSLARASWTTVAILGLAFALVAPFSLRDAWKLTALRLGEERA 257

Query: 223 QLLGVPVMRLRVMLLCVAAACTAGAVAMAGTIGFVGLVVPHGLRLLVGNDQRLLLPACVL 282
              G+ + RLR++ L   +   A +V+  GTIGFVGLV PH  RLL+G D R  LP   +
Sbjct: 258 ASFGIDMPRLRMLSLLRISVLAALSVSFVGTIGFVGLVAPHIARLLLGEDHRYYLPGSAM 317

Query: 283 GGGAMLTLADLLARTVAAPVQLPVGVITALVGVPMFLWLLAR 324
            GG +++LA + ++T+   V +PVG++T+LVG+P+FL ++ R
Sbjct: 318 AGGLIISLASVASKTLLPGVLIPVGIVTSLVGIPLFLIIVLR 359


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,123
Number of extensions: 24335
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)