BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0106.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 536 e-154 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 275 2e-75 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 255 3e-69 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 246 1e-66 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 246 2e-66 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 536 bits (1380), Expect = e-154, Method: Compositional matrix adjust. Identities = 276/348 (79%), Positives = 285/348 (81%), Gaps = 51/348 (14%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MAAISLQGVCKHWG+AQAV NIDFEVK+GQFTVLLGPSGCGKSTTLRLIAGLDKP+SGSI Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAG+E+RL+RVADI Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL+HLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP--- 237 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Query: 238 ----------LAIS--------------------------------------DXEYFGAD 249 L IS EYFGAD Sbjct: 241 LLPLEPHAEGLVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFGAD 300 Query: 250 TIIGARIGNASLLVRAPGQHRFNAGETVHLAWNDRDQYFFDQESGLRR 297 TIIGARIG ASLLVRAPGQHR AG+ V LAW+ RDQYFFD SGLRR Sbjct: 301 TIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFDPASGLRR 348 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 275 bits (704), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 176/237 (74%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MA++ ++ V K +G Q + +D ++ G+FTVL+GPSGCGKST LR++AGL++ T G I Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 IGG V + P R I+MVFQ+YAL+PH++VRDN+ F + + K+ +A + R+++ ADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL+ LL+R P QLSGGQ+QRVA+GRAI+ D V L DEPLSNLDA+LR +MR EI+ L Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP 237 Q+L T +YVTHDQ EAM+MADQ++++R+G +EQ P DLY PA F A FIG+P Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSP 237 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 255 bits (651), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 170/237 (71%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MAA+S++ + K + + + +I+ E++ G+F V +GPSGCGKST LR+IAGL++ + G + Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 IG R + ++P ++R ++MVFQSYAL+PH+S+ DN+ FG+++ + +A ++ +Q A I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 L + HLL+R+P LSGGQ+QRVA+GRAI V L DEPLSNLDA LR +MR E L Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP 237 L TM+YVTHDQ EAM++AD++++L EGRIEQ +P LY PA F A FIG+P Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSP 237 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 246 bits (629), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 173/238 (72%), Gaps = 1/238 (0%) Query: 1 MAAISLQGVCKHW-GQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGS 59 MA ++++ + K + G+A ++ ++ +++ G+F VL+GPSGCGKST LR++ GL++ + G Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 IHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVAD 119 + IGG+ V LPPA+R I+MVFQSYAL+PH++V N+ FG++V ++ ++R++ A Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRAL 179 IL + HLL+R P +LSGGQ+QRVA+GRAI+ + L DEPLSNLDA LR + R EI L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 QQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTP 237 +QL T+VYVTHDQ EAM++ D+++++ EGRI+Q P +LY QP F A FIG+P Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSP 238 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 246 bits (627), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 181/274 (66%), Gaps = 11/274 (4%) Query: 1 MAAISLQGVCKHWGQA----QAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPT 56 MAAI L+ V K +G + ID E+ G+F V++GPSGCGKST LR++AGL++ + Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 SGSIHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQR 116 SG I IG R V L P +R I+MVFQ+YAL+PH++V N+ +G++++ ++ ++R+QR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 VADILGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREI 176 A IL L LLER P QLSGGQ+QRVA+GRAI+ V L DEPLSNLDA+LR +MR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 RALQQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGT 236 + L L T +YVTHDQ EAM++ ++I++ G EQ PA++YA+PAT F A FIG+ Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PLAISDXEYFGADTIIGARI----GNASLLVRAP 266 P AD GA GNAS ++R P Sbjct: 241 PPMNLLQGKLSAD---GASFEVSKGNASDILRLP 271 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 946,239 Number of extensions: 40593 Number of successful extensions: 566 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 148 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)