BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0096.p
         (417 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [He...   729   0.0  

>gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/417 (87%), Positives = 385/417 (92%)

Query: 1   MKSMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGL 60
           M  +HVAIAGAGPAGLAMALYLKRAGHRV+LLERF+ AAPVGSGLILQPTGLTVL+DLGL
Sbjct: 1   MTPLHVAIAGAGPAGLAMALYLKRAGHRVSLLERFLQAAPVGSGLILQPTGLTVLQDLGL 60

Query: 61  FSRIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVLQEAAQREGI 120
           FSRIAALGQRIDRLYGADA SGK VLDVRYDA+ GGRYGIAVHRAALFGVL EAAQ+EGI
Sbjct: 61  FSRIAALGQRIDRLYGADALSGKTVLDVRYDAIAGGRYGIAVHRAALFGVLLEAAQQEGI 120

Query: 121 EAETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPYG 180
           E ETG +I  LE   A A L+ ADGRRIG FDLVIDASGARS LR HAL++CEP+ LPYG
Sbjct: 121 EVETGQDIGNLEHTGAQACLTAADGRRIGGFDLVIDASGARSPLRRHALHSCEPRPLPYG 180

Query: 181 AFWVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQI 240
           AFWVSLRAQPGLSFG NSLVQRYRRASTMIGVLPIGRP  QD+PMVAFFWST+PD+VE +
Sbjct: 181 AFWVSLRAQPGLSFGHNSLVQRYRRASTMIGVLPIGRPTPQDEPMVAFFWSTRPDRVESL 240

Query: 241 KQRGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHST 300
           KQ GL AWK+GVHALWPEC PYLAQIDGFEQMTLARYGHHTLP PYG+RLAIIGDAAHST
Sbjct: 241 KQAGLSAWKDGVHALWPECAPYLAQIDGFEQMTLARYGHHTLPLPYGERLAIIGDAAHST 300

Query: 301 SPQLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQSD 360
           SPQLGQGANMALLDARAL HALQQS+TL+QALPRYAASRRRHVRTFQAMSAMFTPFYQSD
Sbjct: 301 SPQLGQGANMALLDARALSHALQQSETLEQALPRYAASRRRHVRTFQAMSAMFTPFYQSD 360

Query: 361 SVWLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDWNIAPQPSALG 417
           SVWLPWVRDQLAARLSVVPPAPQ+LARMVAGTLVDPFTSIGL+E DW+ APQPSALG
Sbjct: 361 SVWLPWVRDQLAARLSVVPPAPQLLARMVAGTLVDPFTSIGLREHDWHAAPQPSALG 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,386,275
Number of extensions: 63472
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,203,190
Effective search space: 395849510
Effective search space used: 395849510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)