BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0086.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312366|ref|YP_003776458.1| hypothetical protein Hsero_3062...   661   0.0  

>gi|300312366|ref|YP_003776458.1| hypothetical protein Hsero_3062
           [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/388 (81%), Positives = 346/388 (89%)

Query: 1   MNSHPNPLRSLDLFCKVVDNYGDIGICWRLARQLAHEHGLAVRLWVDDLVSFRRIWPTVD 60
           M+S  +P RSLDLFCKVVDNYGDIGICWRLARQLA EHG+AVRLWVDDLVSF RIWP+VD
Sbjct: 1   MSSPASPFRSLDLFCKVVDNYGDIGICWRLARQLAREHGIAVRLWVDDLVSFARIWPSVD 60

Query: 61  TLAGTQEISGVTVQHWRGQDGLFTPDDVADIVIEFFGCEIPPGYVEAMAQRSPKPVWFNL 120
           T A TQ+  GVTVQHWRGQD  +   D+ D+VIEFFGCE+PP YVEAMAQR  KP+WFNL
Sbjct: 61  TQALTQQREGVTVQHWRGQDDHYEASDIPDVVIEFFGCELPPAYVEAMAQRPLKPLWFNL 120

Query: 121 EGLSAEAWVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLQARRQAFLANNEGP 180
           EGLSAE WVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADL+A+RQAFLA+ +G 
Sbjct: 121 EGLSAEPWVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQRQAFLASGQGA 180

Query: 181 AFLGGLGVTAAEAQACKVSLFCYDYAPIAELFAAWQASPAPVACLVPEGVGRAAIEAFLG 240
           AFL GLGVTA EAQ CKVSLFCYDYAPIAELFA+WQA+PAPV CLVPEGVGRAA+EAFLG
Sbjct: 181 AFLAGLGVTAQEAQGCKVSLFCYDYAPIAELFASWQAAPAPVTCLVPEGVGRAAVEAFLG 240

Query: 241 APAHAGTVATQDALTVRVLPFVAQTDYDRLLWSCDLNFVRGEDSFARAQWAGRPFVWNIY 300
           AP  AGT AT+  L+VRVLPFV QTDYDRLLWSCDLNFVRGEDSF RAQWAG+PFVWNIY
Sbjct: 241 APMMAGTAATRGQLSVRVLPFVPQTDYDRLLWSCDLNFVRGEDSFVRAQWAGKPFVWNIY 300

Query: 301 HQDKNLHHTKLNAFLKIYDPATPAVIDLNRAWNGAYPGELDWQASWQALQAELPALSGQA 360
           HQDKNLHHTKLNAFLKIYDPA+ AV DLNRAWNGAYPGELDW+A+WQ LQ ELPAL+  A
Sbjct: 301 HQDKNLHHTKLNAFLKIYDPASAAVADLNRAWNGAYPGELDWRANWQDLQGELPALTQAA 360

Query: 361 EQWVQKLLANGDWMDNLLGFARRLALEE 388
           ++W+ K+LANGD+MDNLL FA RL +EE
Sbjct: 361 DRWLHKMLANGDFMDNLLRFAARLLVEE 388


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,457,883
Number of extensions: 65848
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)