BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0073.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...   513   e-147
gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...    79   4e-16

>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score =  513 bits (1321), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/254 (96%), Positives = 250/254 (98%)

Query: 1   MDKQTAYKDATSYNNYYEFGTDKADPAKNAGSLKTSPWTIDIEGEVKKPMTLDLDALTKL 60
           MDKQTAYKDATSYNN+YEFGTDKADPAKNAG+LKTSPWTIDIEGEVKKP TLDLDALTKL
Sbjct: 69  MDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEVKKPFTLDLDALTKL 128

Query: 61  APLEERIYRMRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLSTP 120
           APLEERIYR+RCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLS P
Sbjct: 129 APLEERIYRLRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLSDP 188

Query: 121 ILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRF 180
           ILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRF
Sbjct: 189 ILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRF 248

Query: 181 VKEEPKTAWNLYAPQEYGFYSNVNPNVDHPRWSQATERRIGEDGFFAPKRKTLMFNGYND 240
           VK+EPKTAWNLYAPQEYGFYSNVNP VDHPRWSQATERRIGEDGFFAPKRKTLMFNGYN+
Sbjct: 249 VKDEPKTAWNLYAPQEYGFYSNVNPGVDHPRWSQATERRIGEDGFFAPKRKTLMFNGYNE 308

Query: 241 VASLYTGMDLRKFF 254
           VA LYTGMDLRKFF
Sbjct: 309 VAGLYTGMDLRKFF 322


>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 19/175 (10%)

Query: 29  NAGSLKTSPWTIDIEGEVKKPMTLDLDALTKLAPLEERIYRMRCVEGWSMVIPWIGYSLS 88
           NA  +  S W +++ G V    +  L+ L  L P   +I R  C+EGWS +  W G  L 
Sbjct: 103 NAPDIDGSDWKLEVSGLVSDKRSWTLERLRAL-PQAGQITRHICIEGWSAIGQWSGVPLR 161

Query: 89  ALIKKAEPTGNAKYVEFVTLADKKQMPGLSTPILNWPYREGLRLDEANHPLTLLTLGMYG 148
             ++       A+YV F   AD+              Y   L +  A HP T+L L    
Sbjct: 162 LFLQAVGADLTARYVGF-KCADR--------------YYSSLDMPTALHPQTILALDFGK 206

Query: 149 EVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRFVKEEPKTAWNLYAPQEYGFYSNV 203
           E LP Q G P+++ VP K GFK+ K +V I    + P   W     Q Y ++S +
Sbjct: 207 EALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWE---DQGYNWFSGI 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,077
Number of extensions: 35333
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)