BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0071.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   382   e-107
gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   167   9e-43

>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  382 bits (981), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/233 (83%), Positives = 211/233 (90%), Gaps = 5/233 (2%)

Query: 1   MSLFKPAVLASAASLCLALA-CASTFAAEAAVAVPAPSGKAVLASTANTATVVLAGGCFW 59
           MS FKPAVLA    LCLAL+  A+  AAE AVAVPAP GKA+LA++A T T+VLAGGCFW
Sbjct: 1   MSRFKPAVLA----LCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFW 56

Query: 60  GVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQI 119
           GVQGVFQHTQGVL+AVSGYAGGKAD+ATY+MVSSG+TGHAEAVQVTYDPRKIS+GQ+LQI
Sbjct: 57  GVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQI 116

Query: 120 YFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSAPIVTQVTP 179
           YFSVAHDPTQLNRQGPD GTQYRSAIFTA+E Q  A QAYIAQ+NAAKV+ APIVTQVT 
Sbjct: 117 YFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTA 176

Query: 180 LQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPVLVFKR 232
           LQGFY AEDYHQDYATLHPNQPYIAYNDLPKI NLQKMYPA+YRADPVLVFKR
Sbjct: 177 LQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR 229


>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  167 bits (422), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 114/167 (68%), Gaps = 3/167 (1%)

Query: 52  VLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKI 111
           VL GGCFW ++ V+Q  +GV    SGY GG   + +Y  V  G TGHAE V++ +DP++I
Sbjct: 13  VLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAFDPQQI 72

Query: 112 SYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSA 171
           SY ++L+I+F++ HDPT LNRQG D GTQYRS I+   E Q    +  IA++  A V+ A
Sbjct: 73  SYRELLEIFFTI-HDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEM--ALVWDA 129

Query: 172 PIVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMY 218
           PIVT+++P Q +YRAEDYHQ+Y   HP Q Y A+   PK++ L++++
Sbjct: 130 PIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVF 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 592,043
Number of extensions: 21163
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)