BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0070.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [...   331   3e-92

>gi|300312352|ref|YP_003776444.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 570

 Score =  331 bits (849), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 192/225 (85%)

Query: 1   MNATDTVRLALDHFHQDDYAAAEQVLFGLLETHPRHKDALQLLGSVVAAQGRFEEAALAW 60
           MN TDT++LAL HF Q+DYA A+ +LF LL+ HPR KDAL LLGSV AAQGRF EAALAW
Sbjct: 1   MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60

Query: 61  QQALPLVDPDSEEALALRYRLGRAFYEQGRYEDSFLLYRDLIEAGHERPEFFVAASAALQ 120
           QQAL L+ PDSEEALALRYRLGRAFYE+GR+ED+FLLYR+LIE+G + PE FVAA+AALQ
Sbjct: 61  QQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQ 120

Query: 121 GMSPSGKNDGQALALLEEALRRNPDVPDTWHRKARLHERAGQWEAARECLRQVLLRFDDR 180
           GMSPSGKND QALALLEEAL+R+P   DTWHRKA LHERA QW+AAR+C+ Q L   D R
Sbjct: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180

Query: 181 AQYWLDAGLIEHALGDYEEALRYYDRALILDPDLVDAHVSRGTHL 225
           AQYWL AGL+EHA G +EEALRYYD+ALIL P+LVDAHVSRGT L
Sbjct: 181 AQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTL 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,081
Number of extensions: 34898
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)