BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0068.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 415 e-117 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 229 3e-61 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 163 2e-41 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 149 3e-37 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 415 bits (1067), Expect = e-117, Method: Compositional matrix adjust. Identities = 227/326 (69%), Positives = 256/326 (78%), Gaps = 1/326 (0%) Query: 1 MDGKDADAHVNLALSLLVLGRLEEALPLYEWRWEGRGADPYRHAAIPPWNGGSSLAGKRI 60 +D KDADAH+NLALSLLVLGRLE+A PLYEWRWEGR ADPYRHA IP WNGGSSLAGKRI Sbjct: 244 IDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAGKRI 303 Query: 61 LLWAEQGQGDTIQFSRYVQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGALPA 120 LLWAEQGQGDTIQFSRYV I++AGA+VV EVP SL LM L V + + LV LP Sbjct: 304 LLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPE 363 Query: 121 IDYQLPLMSLPLVCNTATDNIPAPVPYLNVHIDLKRQWEQQIDALAPRAPGQVRVGIICS 180 +D+QLPLMSLPLVCNT D+IPA VPYL + WE+++ LAPR+P ++R+G++CS Sbjct: 364 VDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCS 423 Query: 181 GNPGNANDARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHAVGEGIR 240 GN GN NDARRSI L RFA LA AR + FF+IQPDLR AD QW +Q P WH VG I Sbjct: 424 GNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQ-PGWHWVGAAIN 482 Query: 241 DFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHDSPWYPTARL 300 DFADTAA L+ MDLVISVDTAAAHLAGA+ PVWIALPY+PDWRW L DSPWYPTARL Sbjct: 483 DFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARL 542 Query: 301 FRQQRAGDWDEVITTLRAALAVASFS 326 FRQQ+ G WD+VI TLRAALAV S Sbjct: 543 FRQQQPGAWDDVILTLRAALAVHGAS 568 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 229 bits (583), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/317 (43%), Positives = 189/317 (59%), Gaps = 13/317 (4%) Query: 8 AHVNLALSLLVLGRLEEALPLYEWRWEGRG-ADPYR--HAA---IPPWNGGSSLAGKRIL 61 A N+ALSLL+ G L+E +E R R + YR H IP W+G SSLAGK IL Sbjct: 333 ARHNIALSLLLQGHLKEGWECHESRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYIL 392 Query: 62 LWAEQGQGDTIQFSRYVQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGALPAI 121 L EQG GD+IQF RYV+ +++ GA V V L+ L Q + + LV + LP Sbjct: 393 LMHEQGFGDSIQFLRYVRMVLDQGARVALHVKNPLYRLFQS--YSPEVTLVRESDPLPPC 450 Query: 122 DYQLPLMSLPLVCNTAT-DNIPA-PVPYLNVHIDLKRQWEQQIDALAPRAPGQVRVGIIC 179 D LMSLP T T D+IP+ P YL+ LK W ++I L+ ++P ++RVG++ Sbjct: 451 DCAYVLMSLPYAMGTDTVDDIPSVPGGYLSADPILKSSWGEKIRQLS-QSPEKLRVGVVW 509 Query: 180 SGNPGNANDARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHAVGEGI 239 GNP + ND RSIA+++FA L + + + F+ +Q + DA G +G+ Sbjct: 510 GGNPEHGNDRHRSIAMDKFATLFQLPN-IEFYSLQKG-KPLDAFKALPPGLPIFNLGDDC 567 Query: 240 RDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHDSPWYPTAR 299 +DFADTAAA++ +DLV+SVDT+ HLAGALG P W+ LP+ PDWRW R DSPWYP R Sbjct: 568 QDFADTAAAIANLDLVVSVDTSVVHLAGALGHPTWVLLPHVPDWRWLQDREDSPWYPGMR 627 Query: 300 LFRQQRAGDWDEVITTL 316 LFRQ DW+ V+T + Sbjct: 628 LFRQPALSDWESVLTKV 644 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 163 bits (412), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 163/332 (49%), Gaps = 40/332 (12%) Query: 11 NLALSLLVLGRLEEALPLYEWRW---EGRGADPYRHAAIPPWNGGSSLAGKRILLWAEQG 67 N AL L G +E RW + RG R P W G L GK ILL AEQG Sbjct: 285 NEALMQLRQGDFVNGWKGFETRWATEQMRGQQ--RQFMQPLWLGEQPLEGKTILLHAEQG 342 Query: 68 QGDTIQFSRYVQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGAL-PAIDYQLP 126 GDT+QF RY + GA V+ EV +L + GLP + Q++ T + P D+ P Sbjct: 343 FGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGLPGVT--QVIGTDHFMRPPFDFHCP 400 Query: 127 LMSLPLVCNTATDNIPAPVPYLNVHIDLKRQWEQQIDALAPRAPGQVRVGIICSGNPGNA 186 LMSLPL C T ++ PYL W Q++ PR +RVG++ +G+ Sbjct: 401 LMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRL----PRNRA-LRVGLVWAGSSAQT 455 Query: 187 N------DARRSIALERFA---ALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHA--- 234 + D RS+ A LA+ + F+ +Q Q A Q HA Sbjct: 456 HPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVG---------QDAVAQLHAHPL 506 Query: 235 ------VGEGIRDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQ 288 + DFA+T A L+ +DL+I+VDT+ HLAGALG PVW+ ++ WRW ++ Sbjct: 507 ASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVE 566 Query: 289 RHDSPWYPTARLFRQQRAGDWDEVITTLRAAL 320 R DSPWY +F Q+ AG WDEVI +RAAL Sbjct: 567 REDSPWYGGMTIFGQRTAGQWDEVIARVRAAL 598 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 103/283 (36%), Positives = 143/283 (50%), Gaps = 10/283 (3%) Query: 36 RGADPYRHAAIPPWNGGSSLAGKRILLWAEQGQGDTIQFSRYVQQIVEAGAEVVFEVPES 95 RG D R P W G + GKR+LLWAEQGQGDT+QF+RY+ + + AEV P S Sbjct: 246 RGIDSPR----PRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPAS 301 Query: 96 LFTLMQGLPVASRIQLVPTAGALPAIDYQLPLMSLPLVCNTATDNIPAPVPYLNVHIDLK 155 L ++ P +++ + G P D L+SLPL+ P PYL Sbjct: 302 LLAVLA--PCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRV 359 Query: 156 RQWEQQIDALAPRAPGQVRVGIICSGNPGNANDARRSIALERFAALAKARDGVSFFIIQP 215 +QW+ + AL P P + R+GI +G R I L+ A L F +Q Sbjct: 360 QQWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTL--PADFVSLQV 417 Query: 216 DLRTADAQWLQQAGPQWHAVGEGIRDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWI 275 ++ D + H + D+ADTAA L +DLVISVDTA HLAGALG+P + Sbjct: 418 EVPAGDQAAHATLAQRLHT--PTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLL 475 Query: 276 ALPYSPDWRWFLQRHDSPWYPTARLFRQQRAGDWDEVITTLRA 318 L Y +WRW ++ +PWYP+ +L RQ+ G W V+ + A Sbjct: 476 PLRYDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLA 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,132,025 Number of extensions: 49433 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 4 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)