BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0066.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312351|ref|YP_003776443.1| outer membrane efflux protein [...   647   0.0  

>gi|300312351|ref|YP_003776443.1| outer membrane efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/399 (80%), Positives = 362/399 (90%), Gaps = 2/399 (0%)

Query: 45  AVSLGDLVKQAAFNNPAAVARQRAVDAAAEGISSAKWQFFPTPSMSVERAGVTSSRDISY 104
           AV+LG+LVKQAAFNNPAA++RQRAV++A E +SSA+WQFFP PS+SVERA   +SRD+SY
Sbjct: 45  AVTLGELVKQAAFNNPAALSRQRAVESAGESVSSARWQFFPNPSISVERASSRNSRDVSY 104

Query: 105 NGDDTVVTLRLQQTLWSGGRLTAQLEQAGHNHESAGEALREQRFRLAEQVISQYSLWVRS 164
            GD +VVTLRLQQTLW+GGRLTAQLEQA HN  SA EALREQR RLAEQVISQYS+WVRS
Sbjct: 105 GGDSSVVTLRLQQTLWAGGRLTAQLEQAEHNQASAEEALREQRLRLAEQVISQYSMWVRS 164

Query: 165 DLATEANQKNLKALEDFLAQSQRREKEGAAARVDVTLVRXRGRRDQALTDLLGAKASRQS 224
           DLA  AN KNL+ LE FL QS RRE+EGAAARVDVTLVR  GRRDQALTDLLGAKA R S
Sbjct: 165 DLAASANDKNLQELEKFLEQSVRREREGAAARVDVTLVR--GRRDQALTDLLGAKAGRSS 222

Query: 225 ARLQLEQLVGLPLSDEELRADVAKMSVSEDLPALTESMLESSPLLKRLRADAKVQESAIQ 284
           ARLQLEQLVG+PL+DEE+RADVAKM VS+DLP LTES L SSPL+KRLRADA+VQESAI+
Sbjct: 223 ARLQLEQLVGMPLTDEEIRADVAKMEVSDDLPTLTESTLGSSPLIKRLRADAQVQESAIK 282

Query: 285 IRSASYWPEVYARLEHQRGNFSVPHTPNANRAFIGMQMQLGAGLSLGSEVAAAQGRYQSA 344
           IR ASYWPEVYARLEHQRGN+SVP+ P+ NRAFIGMQMQLGAGLSLGSEVAAA+GRY++A
Sbjct: 283 IRQASYWPEVYARLEHQRGNYSVPNQPSNNRAFIGMQMQLGAGLSLGSEVAAARGRYEAA 342

Query: 345 LLAVDAARLELISQIAATYTEYQQAEARARNLEDVAVSSEEVLASYTRQYLSGRRSWLDV 404
           LLAVDAARLEL+SQ+ + YTEYQQA AR+RNLE+VA+S++EVL+SYTRQYLSGRRSWLDV
Sbjct: 343 LLAVDAARLELVSQVGSIYTEYQQALARSRNLEEVALSADEVLSSYTRQYLSGRRSWLDV 402

Query: 405 MNAAREVVQTDLQKADVTAMIIADGRKLQLWAYGLDQVR 443
           MNA REVVQ DLQ+ADVTAMIIA+G KL+LWAYGLD+VR
Sbjct: 403 MNAVREVVQADLQRADVTAMIIANGHKLRLWAYGLDEVR 441


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,225,799
Number of extensions: 46246
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)