BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0064.p (699 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporte... 1186 0.0 gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 214 2e-56 gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibioti... 191 1e-49 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 133 5e-32 gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas... 131 2e-31 >gi|300312350|ref|YP_003776442.1| bacteriocin/lantibiotic exporter/double-glycine peptidase domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 730 Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/691 (84%), Positives = 636/691 (92%), Gaps = 2/691 (0%) Query: 1 MSELASSLSWAVMTAARRHGVVIDSVRLNAAITQSMVKSGAAAIDINSLCAALSLPKSQH 60 MSE+++SLSWA+ AARR GVVID+ RL AI ++ K G+ DI LC AL+L + +H Sbjct: 33 MSEISTSLSWALTMAARRQGVVIDTQRLGTAIAAAVGKGGSP--DIPKLCRALNLSRPRH 90 Query: 61 LAKPDRAQLPMLGVVRERGWGVIADQRPDGRWIFISEEGHALVSDSDLSEGAYKLDFAPL 120 LAKPDR LP+L V+E+GWG++ DQRPDGRW F+ G ++V D+++ G Y+LDF Sbjct: 91 LAKPDRPSLPLLCQVKEQGWGLLVDQRPDGRWDFLCHTGQSVVGDAEIVGGGYRLDFTEQ 150 Query: 121 GNKPDQHGFERVFKEALGEYRPIILEVVIASVVMSVIALGASVFSMQVYDRVIPTHGVAT 180 G K Q GFERVF +A+GE+RP+++E+V+ASVVMS+IALGAS+FSMQVYDRVIPTHGVAT Sbjct: 151 GGKKGQQGFERVFLDAIGEFRPVLIEIVVASVVMSIIALGASIFSMQVYDRVIPTHGVAT 210 Query: 181 LIVLAIGVSLAIVFELGMKFARSHIMDSVVSGLDAKLSQALFERLLSVRVDQLPGSVGSL 240 LIVLAIGV LAI+FELGMKFARSHIMD VVSGLDAKLSQAL+ERLL+VRVDQLPGSVGSL Sbjct: 211 LIVLAIGVGLAILFELGMKFARSHIMDKVVSGLDAKLSQALYERLLAVRVDQLPGSVGSL 270 Query: 241 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMALVPTVFGLAAIGIGYL 300 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIA IASPWMALVPTVFG+ AI IGYL Sbjct: 271 AGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIALIASPWMALVPTVFGVVAILIGYL 330 Query: 301 SNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM 360 SNRKV RLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM Sbjct: 331 SNRKVARLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAM 390 Query: 361 RAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGL 420 RAIGDHAGYIAA LQQLSYSTTVI+G+FLVINGQITMGALIACSILGGRILAPVAMIPGL Sbjct: 391 RAIGDHAGYIAATLQQLSYSTTVIIGAFLVINGQITMGALIACSILGGRILAPVAMIPGL 450 Query: 421 MVQRAHTKATLAGLEKIYALQTDQGNERQLTPDTLRGEFRVEEVKFTYAGSMLNAMSIDQ 480 MVQRAHTKATLAGLEKIYALQTDQG+ERQLTPD LRGEFR+EE KFTYAGSMLNAM+IDQ Sbjct: 451 MVQRAHTKATLAGLEKIYALQTDQGSERQLTPDNLRGEFRIEEAKFTYAGSMLNAMTIDQ 510 Query: 481 LGIRAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILIDGLDMANINRLTLNQHIGYLQ 540 L I AGERVA+LGPIGAGKSTILRLLSGLYRPQQGRIL+DGLDMANINRLTLNQHIGYLQ Sbjct: 511 LTINAGERVAVLGPIGAGKSTILRLLSGLYRPQQGRILLDGLDMANINRLTLNQHIGYLQ 570 Query: 541 QDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGG 600 QDHRLFVG+LRENLLIGLPDPGD+VLRQVMERTGLLRLVS+HPKGLDLPIQEGGRGLSGG Sbjct: 571 QDHRLFVGSLRENLLIGLPDPGDDVLRQVMERTGLLRLVSSHPKGLDLPIQEGGRGLSGG 630 Query: 601 QRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLGVLNEEISGGRTLVVVTHKPAFLP 660 Q+QLVAFTRLLLC+P++FLLDEPTASMDEDLERHCL VLN+EISGGRTLVVVTHKPAFLP Sbjct: 631 QKQLVAFTRLLLCQPNVFLLDEPTASMDEDLERHCLNVLNQEISGGRTLVVVTHKPAFLP 690 Query: 661 MVERVIVVVGNRIVLDGPRDAVLARLRGDTA 691 MV+RVIVVVGNRIVLDGPRD +LARLRG A Sbjct: 691 MVDRVIVVVGNRIVLDGPRDVILARLRGQQA 721 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 182/697 (26%), Positives = 333/697 (47%), Gaps = 39/697 (5%) Query: 11 AVMTAARRHGVVIDSVRLN-----AAITQSMVKSGAAAIDINSLCAALSLPKSQHLAKPD 65 +M AR HG+ D+ +L + A + + + C Q + + Sbjct: 19 CLMMMARLHGIAADAQQLQHRFGRQPFEMQTILLAARVLGMTAKCL------HQQRERLE 72 Query: 66 RAQLPMLGVVRERGWGVIAD------QRPDGRWIFISEEGHA--LVSDSD---LSEGAYK 114 R LP +G+ R + V+A + G+ I + + G A ++S D L G Sbjct: 73 RTPLPAIGIDRNGRFFVLAKVEQAQGESAHGQRILVQQPGQAPQVLSQRDFEALWSGQVI 132 Query: 115 LDFAPLGNKPDQHGFE-RVFKEALGEYRPIILEVVIASVVMSVIALGASVFSMQVYDRVI 173 L + + F+ F A+ +YR + EV++ S+V+ +I L +F V D+V+ Sbjct: 133 LFTSKASYAQESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVL 192 Query: 174 PTHGVATLIVLAIGVSLAIVFELGMKFARSHIMDSVVSGLDAKLSQALFERLLSVRVDQL 233 H + TL V+A+G+ A VFE + R+ I + S +D +L LF LLS+ + Sbjct: 193 VNHAMMTLNVIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYF 252 Query: 234 P-GSVGSLAGQLRGYEQIRSFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMALVPTVFGL 292 G ++R E IRSF T + ++D+ +F+ V+ W ++ ++ L Sbjct: 253 QVRRAGDSIARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVML-----WYSVSLSLIVL 307 Query: 293 AAIGIGYLSNRKVV-----RLADK-SAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRW 346 A+I + L + RL DK + +A N LVET+ G++T+K+ + ++ +W Sbjct: 308 ASIPVYVLLSLVFTPLLRERLNDKFNKSAEN--QSFLVETLTGMDTVKAMAVEPRWQQKW 365 Query: 347 IDVSAESIRSDMAMRAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSIL 406 A + + + I A ++ +L + +G+ LV+ ++++G L+A ++L Sbjct: 366 DKQLAAYVAAGLTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNML 425 Query: 407 GGRILAPVAMIPGLMVQRAHTKATLAGLEKIYALQTDQGNERQLTPDTLRGEFRVEEVKF 466 G++ +P+ + L +++ L + +T+ R P + G + V F Sbjct: 426 AGQVASPILRLAQLWNDFQQIGISMSRLADVLDARTEVAGNRTRLP-RVNGAISFDLVSF 484 Query: 467 TYAGSMLNAMSIDQLGIRAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILIDGLDMAN 526 Y + L IR GE + I+G G+GKST+ +L+ LY + GRI +DG D+A Sbjct: 485 RYRPETPEVIRGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAI 544 Query: 527 INRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGL 586 I+ +L Q IG + Q++ LF ++R+N+ + P E + + + G + P+G Sbjct: 545 IDTASLRQQIGVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGY 604 Query: 587 DLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLGVLNEEISGG 646 D + E G GLSGGQRQ +A R L+ P I + DE T+++D + E+ + +I G Sbjct: 605 DTMVGEQGSGLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNM-RQICAG 663 Query: 647 RTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVL 683 RT++++ H+ + + +R+IV+ R+ G D ++ Sbjct: 664 RTVLIIAHRLSAVRDADRIIVMERGRVAESGSHDELI 700 >gi|300311132|ref|YP_003775224.1| ABC-type bacteriocin/lantibiotic ATPase/permease fusion exporter protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 168/550 (30%), Positives = 283/550 (51%), Gaps = 14/550 (2%) Query: 137 LGEYRPIILEVVIASVVMSVIALGASVFSMQVYDRVIPTHGVATLIVLAIGVSLAIVFEL 196 L Y +E+++A +V++V+ L ++S +YD+VI H TL L +G+ L + EL Sbjct: 28 LRAYGSRFVEIIVAGIVVNVLGLLMPLYSRLIYDKVIGNHIPETLWALTLGMLLFVALEL 87 Query: 197 GMKFARSHIMDSVVSGLDAKLSQALFERLLSVRVDQLPGSVGSLAGQLRGYEQIRSFYTS 256 ++ R + + + LD++ + R+L+ RV Q P VG + + R R +S Sbjct: 88 VLRIIRVYYTEQLAGRLDSEFDEVSARRMLTARV-QAP--VGVVLARYRDLSAARDLMSS 144 Query: 257 QTLFTLVDLPLGLLFVLVIAFIASP--WMALVPTVFGLAAIGIGYLSNRKVVRLADKSAA 314 + LVDLP LL+++V+ I W+ LV + + + A+ + Sbjct: 145 NYMLLLVDLPFLLLYLVVLGLIGGHMVWVLLVGGGLLVGLQLLLKVPGND---YANSAMK 201 Query: 315 ASNLKTGLLVETVEGVETIKSGSGGWKFLSRWI-DVSAESIRSDMAMRAIGDHAGYIAAM 373 A K L V G+ET+K+ + L ++ D SA ++ + R + + I+++ Sbjct: 202 AGTGKVDKLASIVYGMETLKTSPLQHRLLRAFLADASANAV-AQAKSRFWMNTSYAISSV 260 Query: 374 LQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLAG 433 L T++VG +LV + +T+GALIACS+L R ++ + + + + A Sbjct: 261 GYTLISVATLVVGVYLVEDNLLTVGALIACSLLISRAATVLSSLAAFLGRIEMFRRARAE 320 Query: 434 LEKIYALQTDQGNERQLTPDTLRGEFRVEEVKFTYAGSMLNAMSIDQLGIRAGERVAILG 493 ++++ + +QG + +RG +V + + L I+ GE+V I+G Sbjct: 321 FDQLFE-EPEQGPTADVLRQDMRGLIQVGNLLLHLDKKETPTLRNISLTIQPGEKVGIVG 379 Query: 494 PIGAGKSTILRLLSGLYRPQQGRILIDGLDMANINRLTLNQHIGYLQQDHRLFVGTLREN 553 G+GKST+LR L+GL++ ++G +LIDG+ + + IG+ Q+ LF GT+ N Sbjct: 380 RSGSGKSTLLRTLAGLHQAEEGHVLIDGVAVTAYAEEVRMRCIGFKPQEPFLFDGTVAAN 439 Query: 554 LLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLLLC 613 + +G PG +V + + L L++ LD I+ G LSGGQRQ+VA R++ C Sbjct: 440 IFVGDRVPG-QVYEAALAVSSLDDLIARGELRLDQLIKAPG-NLSGGQRQMVALARVIAC 497 Query: 614 RPDIFLLDEPTASMDEDLERHCLGVLNEEISGGRTLVVVTHKPAFLPMVERVIVVVGNRI 673 P I LLDEPT +D+ E + L +GGRTLVV TH PA L ++R++V+ G RI Sbjct: 498 TPRILLLDEPTTGIDQQTEARIIERL-VGYAGGRTLVVATHSPALLRHMDRIVVIDGGRI 556 Query: 674 VLDGPRDAVL 683 V DGPR +L Sbjct: 557 VADGPRAQIL 566 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 187/390 (47%), Gaps = 16/390 (4%) Query: 301 SNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRS-DMA 359 + +++ +L S A + T ++ ET + IK GG + + AE++RS M Sbjct: 178 TGKRLKKLNRDSLAVNAEMTQVIEETTRAQQVIKI-FGGQDYEKERFNRRAENLRSYTMR 236 Query: 360 MRAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPVAMIPG 419 M A I ++ + + +++ NGQIT+G ++ +L P+ + Sbjct: 237 MTAAFSSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAE 296 Query: 420 LM--VQRAHTKATLAGLEKIYALQTDQGNERQLTPDTL----RGEFRVEEVKFTYAGSML 473 + +QR +A E++Y L D+ ER +T + L G+ EV F Y G Sbjct: 297 INGPLQRG-----MAAAEEVYKL-IDKTTER-ITGEALAGRATGQLDFVEVGFAYPGHEQ 349 Query: 474 NAMSIDQLGIRAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILIDGLDMANINRLTLN 533 A+ L + AGE +A +G G GKST++ L+ G Y G I +DG D+ I+ +L Sbjct: 350 LALKNINLHVEAGETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLR 409 Query: 534 QHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEG 593 Q I + Q+ LF TL N+ G +P + +E L +V+ P+GL + + Sbjct: 410 QQIAMVNQNTVLFDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDN 469 Query: 594 GRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLGVLNEEISGGRTLVVVT 653 G LSGGQRQ VA R + I +LDE T+++D + ER L + + GRT V+ Sbjct: 470 GSRLSGGQRQRVAIARAIYKDAPILILDEATSALDTESERAVQAAL-DRLMQGRTTFVIA 528 Query: 654 HKPAFLPMVERVIVVVGNRIVLDGPRDAVL 683 H+ + + +R++V+ +I G A+L Sbjct: 529 HRLSTIERADRIVVLAHGQIAEIGTHQALL 558 >gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 618 Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 123/420 (29%), Positives = 197/420 (46%), Gaps = 28/420 (6%) Query: 282 WMALVPTVFGLAAIGIG--YLSNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGG 339 WM L P LAA + Y R + +A A A +L TG + + + T+K S Sbjct: 182 WM-LAPFFIWLAAFAVALRYFVPR-LSAVARNQADARSLMTGRITDAYTNIATVKLFSHA 239 Query: 340 WKFLSRWIDVSAESIRS-----DMAMRAIGDHAGY--IAAMLQQLSYSTTVIVGSFLVIN 392 R D + ++R + MR + +G+ + +L + V +L Sbjct: 240 ----GREADYARSAMREFLVTVNQQMRLV---SGFEVVNHLLNMVLIIGATGVSLYLWTQ 292 Query: 393 GQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLAGLEKIYALQTDQGNERQLTP 452 G++ +GA+ A + + R+ + M T+ A D + P Sbjct: 293 GKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAQP 352 Query: 453 -DTLRGEFRVEEVKFTYAGSMLNAMSIDQLG--IRAGERVAILGPIGAGKSTILRLLSGL 509 +GE R E V F+Y G+ + +D+L IR GE++ ++G GAGKSTI+ LL Sbjct: 353 LKVSQGELRFEGVSFSYGGAAPRPV-VDKLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRF 411 Query: 510 YRPQQGRILIDGLDMANINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQV 569 Y + GRI IDG D+A++ + +L IG + QD L ++REN+ G PD D + Sbjct: 412 YDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENITYGRPDASDAEMTHA 471 Query: 570 MERTGLLRLVS--AHPK---GLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPT 624 ER + A K G D + E G LSGGQRQ +A R++L I LLDE T Sbjct: 472 AERAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEAT 531 Query: 625 ASMDEDLERHCLGVLNEEISGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVLA 684 +++D ++E L + + G+T+V + H+ + + ++R+IV+ RIV G +LA Sbjct: 532 SALDSEVEAAIQTSLYKLME-GKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGSHAELLA 590 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,083,402 Number of extensions: 87765 Number of successful extensions: 657 Number of sequences better than 1.0e-08: 111 Number of HSP's gapped: 556 Number of HSP's successfully gapped: 116 Length of query: 699 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 607 Effective length of database: 1,184,250 Effective search space: 718839750 Effective search space used: 718839750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)