BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0063.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312345|ref|YP_003776437.1| cell wall surface anchor protei...   193   8e-51
gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088...   189   2e-49
gi|300313785|ref|YP_003777877.1| autotransporter adhesin protein...   133   1e-32

>gi|300312345|ref|YP_003776437.1| cell wall surface anchor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 7175

 Score =  193 bits (491), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 26  ISDNTPGVPDNYADEATHKLTDLGNTVLRALVTATGASQNVNVTALTELAVIKAGMDVGM 85
           I DNTPGVPDN+ DEA+ ++TDLG   LRAL  A G +Q VNVTALTELA IKAG+  G 
Sbjct: 219 IRDNTPGVPDNFGDEASLRMTDLGVIPLRALAVAGGVNQTVNVTALTELAAIKAGLAQGQ 278

Query: 86  LNPSEVPDLSAERIAAINNAVGGFFKVDAIGGEVVPTASQNVNGQVVVNPGFNPGISSEA 145
           +NP     L    +   NNAVGG FKVDAI GEVVPT++ NV GQV+ N  F   IS++A
Sbjct: 279 VNPGAA-SLDVNAVNNANNAVGGLFKVDAIAGEVVPTSTVNVQGQVISNAAFTNAISNQA 337

Query: 146 YNYGVALKAISNLSALDPKVYPAQIDAIRKLANALQFVDDSNSALKWATNVRGQSHGAA 204
           +NYG ALKAI+NL  LD   YP Q DAI+KLA+ALQFVD + ++LKWATN +GQ+  AA
Sbjct: 338 HNYGAALKAIANLVELDRNNYPTQADAIQKLADALQFVDGAGASLKWATNEKGQALPAA 396


>gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088
           [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score =  189 bits (479), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 122/174 (70%)

Query: 26  ISDNTPGVPDNYADEATHKLTDLGNTVLRALVTATGASQNVNVTALTELAVIKAGMDVGM 85
           + DNTP V DNY DEAT  +T+LG T LRALV A G +Q VNVTALTELAV KAG+  G+
Sbjct: 273 VRDNTPEVADNYIDEATQTITNLGATPLRALVEANGVNQTVNVTALTELAVQKAGLAAGV 332

Query: 86  LNPSEVPDLSAERIAAINNAVGGFFKVDAIGGEVVPTASQNVNGQVVVNPGFNPGISSEA 145
              +  P+++ ERI + N AVG FFKVDAI GEVVPT   N  G  VVNP +N  IS+ A
Sbjct: 333 TTLAGAPEVTTERINSANAAVGAFFKVDAIAGEVVPTHIANSQGVGVVNPAYNAAISAGA 392

Query: 146 YNYGVALKAISNLSALDPKVYPAQIDAIRKLANALQFVDDSNSALKWATNVRGQ 199
            NYG ALKA++NL  LD + YP Q   ++KLA AL FVD++ SALKWAT  +G+
Sbjct: 393 QNYGAALKALANLVLLDDRTYPNQAAVLQKLAEALVFVDEARSALKWATTAQGE 446


>gi|300313785|ref|YP_003777877.1| autotransporter adhesin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 3631

 Score =  133 bits (335), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 108/171 (63%)

Query: 26  ISDNTPGVPDNYADEATHKLTDLGNTVLRALVTATGASQNVNVTALTELAVIKAGMDVGM 85
           + D+TPGV DN+ADEAT ++ DLG+TVLR++V A G +Q +N+TALTELA +KAG+  G 
Sbjct: 329 VRDSTPGVADNFADEATLRIADLGDTVLRSVVQAEGGNQTINITALTELAALKAGLASGQ 388

Query: 86  LNPSEVPDLSAERIAAINNAVGGFFKVDAIGGEVVPTASQNVNGQVVVNPGFNPGISSEA 145
            N      ++A  +AA N AV   F V+   G+V+ T   + NG   +NP F    ++ A
Sbjct: 389 TNLGAASQVTAPTVAAANAAVSALFMVNISSGDVLTTTVTDANGAAAINPAFARSSNTSA 448

Query: 146 YNYGVALKAISNLSALDPKVYPAQIDAIRKLANALQFVDDSNSALKWATNV 196
            +YG+ALKAI+NL   D   YP Q  AI+KLA++L F D   + LKW   V
Sbjct: 449 RHYGIALKAIANLQLTDATRYPDQGVAIQKLADSLGFSDTQPNKLKWRDTV 499


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 545,359
Number of extensions: 18475
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 128 (53.9 bits)