BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0059.p
         (132 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312343|ref|YP_003776435.1| hypothetical protein Hsero_3039...   158   1e-40
gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088...    56   1e-09

>gi|300312343|ref|YP_003776435.1| hypothetical protein Hsero_3039
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  158 bits (399), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1   MSDAASSIEDALMGKTTYTLDVMQAGTALRKIPIETIQDVRSLGIDLLLVLRSGGQILLR 60
           MS  A + E+AL GKTTYTLD+ QAGTALRKIPIE+I+DVRSLGIDLLLV  SGGQILLR
Sbjct: 1   MSQEAQTAEEALAGKTTYTLDIAQAGTALRKIPIESIKDVRSLGIDLLLVFSSGGQILLR 60

Query: 61  EGALDALVNPDRRLQFSDGVLTLQQIFMQSEQFDFLHQSGSA 102
           EGAL+ALV+P RRLQFSDGVLTLQQIF QSE+FDF +   SA
Sbjct: 61  EGALEALVHPQRRLQFSDGVLTLQQIFTQSERFDFFNNDSSA 102


>gi|300310421|ref|YP_003774513.1| hypothetical protein Hsero_1088
          [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score = 55.8 bits (133), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 55/80 (68%)

Query: 16 TTYTLDVMQAGTALRKIPIETIQDVRSLGIDLLLVLRSGGQILLREGALDALVNPDRRLQ 75
          TT  L + ++   L+ I +++I+DVR+L +DLLLVL +G QIL+  GA+ AL +PD  LQ
Sbjct: 2  TTTVLKLSESSAFLKTISLKSIKDVRALDVDLLLVLTNGDQILISGGAMHALNSPDMALQ 61

Query: 76 FSDGVLTLQQIFMQSEQFDF 95
          FSDG L L ++F Q E+ + 
Sbjct: 62 FSDGQLPLARVFEQIERINV 81


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 333,734
Number of extensions: 12513
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 132
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 57
Effective length of database: 1,264,745
Effective search space: 72090465
Effective search space used: 72090465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)