BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0054.p
         (433 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312338|ref|YP_003776430.1| 3-hydroxy-3-methylglutaryl-coen...   784   0.0  

>gi|300312338|ref|YP_003776430.1|
           3-hydroxy-3-methylglutaryl-coenzyme A reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/435 (89%), Positives = 404/435 (92%), Gaps = 2/435 (0%)

Query: 1   MHSDKHSAT--DSRLPGFRSLTPPQRLAEVARLAGLGDSEQILLGQPGGLPLATADGMIE 58
           M  D H+    DSRLPGFR+ TP QRLAEV RLA L  +EQ LLGQPG LPL TADGMIE
Sbjct: 1   MSQDVHAGATPDSRLPGFRTYTPAQRLAEVGRLAQLDQAEQALLGQPGALPLGTADGMIE 60

Query: 59  NVVGTFQLPLGVAGYFQLNGRDVLVPMAVEEPSVVAAASFMAKLVRACGGFQTSSSTPLM 118
           NVVG+FQLPLGVAGYFQLNGRDVLVPMAVEEPSVVAAASFMAKLVR CGGFQTSSS PLM
Sbjct: 61  NVVGSFQLPLGVAGYFQLNGRDVLVPMAVEEPSVVAAASFMAKLVRTCGGFQTSSSLPLM 120

Query: 119 RAQIQLLGVTDPHGARLAILKDRQAIIDIANSRDQLLNELGGGCRDIEVHVFPDTRRGAM 178
           RAQIQL G++DPHGARLAILK+RQAIIDIANSRDQLL +LGGGCRDIEV VFPDTRRGAM
Sbjct: 121 RAQIQLTGISDPHGARLAILKERQAIIDIANSRDQLLQQLGGGCRDIEVQVFPDTRRGAM 180

Query: 179 VVTHLIVDVRDAMGANTVNTMAEAVAGHIEEITGGKVRLRILSNLADLRLARARVKVSAK 238
           VVTHLIVDVRDAMGANTVNTMAEAVA HIE +TGGKVRLRILSNLADLRLARARVKVSA 
Sbjct: 181 VVTHLIVDVRDAMGANTVNTMAEAVASHIERVTGGKVRLRILSNLADLRLARARVKVSAD 240

Query: 239 VLATSAYSGEEVIDGIVDAYEFAAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAH 298
           VL+T+ Y GEEVI+GIVDAYE AAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAH
Sbjct: 241 VLSTAQYRGEEVINGIVDAYELAAVDPYRAATHNKGIMNGIDPVIVATGNDWRAVEAGAH 300

Query: 299 AYACRHGRYTSLTHWEIAADGDLVGTLEIPMPVGLVGGATKTHPAARAALKILGVQSAQE 358
           AYACRHGRYTSLTHWEIAADGDLVGTLEIPMPVGLVGGATKTHPAAR ALKILGVQSAQ 
Sbjct: 301 AYACRHGRYTSLTHWEIAADGDLVGTLEIPMPVGLVGGATKTHPAARVALKILGVQSAQA 360

Query: 359 LAEVAVAVGLAQNMAALRALATEGIQRGHMALHARNIALAAGAEPHEMDWLVQQMVARHD 418
           LAEVAVAVGLAQNMAALRALATEGIQRGHMALHARNIALAAGAE  EMDWLVQQMVARHD
Sbjct: 361 LAEVAVAVGLAQNMAALRALATEGIQRGHMALHARNIALAAGAEASEMDWLVQQMVARHD 420

Query: 419 VRVDYARSLLAERRR 433
           VRVDYA++LLAERRR
Sbjct: 421 VRVDYAKALLAERRR 435


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,277,356
Number of extensions: 50128
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 345
Effective length of database: 1,203,190
Effective search space: 415100550
Effective search space used: 415100550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)